Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi07g2028 | ATGCGAAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATCCAGTTCGCTAATACTCTAGCTTCTGATTATCCAAGAGATTACGATGGTGCCTGCATCCAAATGAGATTGTCCTACAGCCCAGCAGCTCAATTTTTTCTTTTTCTGGTTCAATGGACTGATTGTCATCTTGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGACGGGAAGACAACGATGTCCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTTTATGGTGTGATCTTTCCCTCTTTATTGCAACTCCACAGAGGAATCACTGATGTAGAAGAAAGGAAACAAAAAGATATATATGCTGCTAAGTATAAGCCAAAACCTGTAATAAACAAAGGAAAGCTCTCTGAAATTGATATAGAGAGAGAAGAAGAATGTGGTATTTGCATGGAGATGAACAGCAAGATTGTGTTGCCCAATTGCAATCACTCGATGTGTATGAAATGCTATCGAGACTGGCATGCACGATCTCAATCCTGCCCCTTCTGCCGGGACAGTCTTCAAAGAGTAAACTCTGGTGACCTATGGATCTTCATGGGCAACACTGAGATTGATGACTTGGCTTCAATCACCAAGGAGAATTTGAAGAGGCTATTTATGTACATTGAAAAGTTGCCTCTTATTGTTCCAGATCCCATTTTCTTGTCTTATCCTCACCGCTGGTGA | 726 | 0.4132 | MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTMSIYERKASLKEFYGVIFPSLLQLHRGITDVEERKQKDIYAAKYKPKPVINKGKLSEIDIEREEECGICMEMNSKIVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLQRVNSGDLWIFMGNTEIDDLASITKENLKRLFMYIEKLPLIVPDPIFLSYPHRW | 241 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi07g2028 | 241 | ProSiteProfiles | Zinc finger RING-type profile. | 146 | 184 | IPR001841 | - | |
| Glsi07g2028 | 241 | FunFam | RING/U-box superfamily protein | 128 | 193 | - | - | |
| Glsi07g2028 | 241 | Pfam | Zinc finger, C3HC4 type (RING finger) | 143 | 190 | - | - | |
| Glsi07g2028 | 241 | SUPERFAMILY | RING/U-box | 134 | 189 | - | - | |
| Glsi07g2028 | 241 | SMART | ring_2 | 146 | 183 | IPR001841 | - | |
| Glsi07g2028 | 241 | ProSitePatterns | Zinc finger RING-type signature. | 161 | 170 | IPR017907 | - | |
| Glsi07g2028 | 241 | PANTHER | RING FINGER PROTEIN 41, 151 | 3 | 237 | - | - | |
| Glsi07g2028 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 113 | 193 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi07g2028 | Glsi-ChrGlsi07 | 64476702 | 64479775 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi07g2028 | 90 | 184 | C3H Transcription Factor Family | AT5G01960 | 30.000 | 2.20e-07 | 49.3 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Glsi06g1910 | 06 | 66283158 | 66286250 | Glsi07g2028 | 07 | 64476702 | 64479775 | CCT |