Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2026 ATGAAGTCTGGCAAGGGGAAGGGAGCAGTAAAGATCTCAAAGGAAGCATTGAAGCCTGTTGATGACAGAAAGGTTGGAAAGCGAAAAGCTGCTGCTAAACCCAACAAGAGTAGTAAACGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCAGCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTTAGAACGACCTTTAAGACGGAAAATCCTGGGGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTGCTGCTGAGAAAGCCCCATATGAAGCAAAGGCTGCAAAAAGGAAAACTGAGTACGAGAAAGTTATGAATGCTTATAATAGAAAGCAGGCAAGCTCAGCAGATGATGGAGATGAGGAATCAGACAGGTCCAAGTCTGAAGTGAATGATGAAGATGATGAAGCCAGTGGAGAGGAGGAGCACCAAGAGGAAGAGGAAAACGAAGAGGAAGAAGAGGACGATGAGGATGAAGATGATTGA 519 0.4566 MKSGKGKGAVKISKEALKPVDDRKVGKRKAAAKPNKSSKRQAKAKKDPNKPKRPASAFFVFLEEFRTTFKTENPGVKAVSAVGKAGGEKWKSMTAAEKAPYEAKAAKRKTEYEKVMNAYNRKQASSADDGDEESDRSKSEVNDEDDEASGEEEHQEEEENEEEEEDDEDEDD 172
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2026 172 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Glsi07g2026 172 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 157 IPR031061 -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 83 172 - -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 125 143 - -
Glsi07g2026 172 Gene3D High mobility group box domain 34 136 IPR036910 -
Glsi07g2026 172 Coils Coil 147 171 - -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 8 28 - -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 144 172 - -
Glsi07g2026 172 SUPERFAMILY HMG-box 36 120 IPR036910 -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 101 116 - -
Glsi07g2026 172 CDD HMG-box_AtHMGB1-like 52 112 - -
Glsi07g2026 172 MobiDBLite consensus disorder prediction 1 55 - -
Glsi07g2026 172 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Glsi07g2026 172 SMART hmgende2 50 121 IPR009071 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi07g2026 Glsi-ChrGlsi07 64474110 64475584 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Glsi07g2026 HMG_box 5.8e-23 CL0114