Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2020 ATGATTGGAAATTGCTTTGGTTCCTTGAATTGGTGCAAAGGGGGGAATGATCCTGCTGAGCATTCACAGGAGCAAGTGCTATCAACTAAAAAATTTAGCTATAACTCATTGAGATCAGCAACAGGAGATTTTCATCCATCAAGCAAAATTGGCGAAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTGAGGGATGGAACTCCAGTTGCTATGAAAGCTCTTTCTGTAGAGTCTAAACAAGGGACAAAAGAATTTATGACAGAAATTGATATGATATCAAATATACGACATCCAAACCTTGTACAACTAATTGGTTGCTGTGTTGAGGGCAACCATCGAATATTGGTATACGAATTTCTGGAGAAAAATAGCCTTGCGAGTTCTCTGCTTGGTTCCAGAAGCAAATATGTTGCTCTGGATTGGCCAAAGAGGGCTGCTATTTGCCGCGGTACAGCTTCTGGTCTCGCATTTCTTCATGAAGAGGCACAACCAAACATTGTTCACAGAGATATCAAGGCTAGCAACATACTGCTTGATGAGAACTTTCATCCTAAAATTGGGGACTTTGGCCTTGCGAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTGGCAGGAACTGTGGGATATCTTGCACCAGAATATGCACTTCAAGGACAGCTTACAAAGAAGGCAGATGTGTACAGTTTTGGTGTTCTCATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGAGAACCTGTTGGTTCTGGTGGAATGGACATGGAAGCTGAAAGAAGAGAACAGGCTTCTGGACATTGTTGATCCAGAGTTAACTGAATATGATGAGATTGAGGTTTTACGTTTCATTAAGGTTTCTCTGTTTTGTACCCAAGCAGCTGCACATCATAGACCAACCATGAAACAAGTAGAAGAAATGCTTTGCAGGGAAGTTCACCTTAATGACAAGGCATTGACTGAGCCTGGAGTTTACAGGTGGTATGCCCCCAGAAAGTTGGGAAGTTCTTCAGATGAGACATCAACTTCTCAAGTGAAGTACGAGAAACCTGAAAATCCGGACGTCACCTCAACCCACTTTAGTGGTACTGATATTATCACAGAGATGATTCCAAGATGA 1137 0.4186 MIGNCFGSLNWCKGGNDPAEHSQEQVLSTKKFSYNSLRSATGDFHPSSKIGEGGYGVVYKGVLRDGTPVAMKALSVESKQGTKEFMTEIDMISNIRHPNLVQLIGCCVEGNHRILVYEFLEKNSLASSLLGSRSKYVALDWPKRAAICRGTASGLAFLHEEAQPNIVHRDIKASNILLDENFHPKIGDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALQGQLTKKADVYSFGVLMLEIISGKSSSKAAFGENLLVLVEWTWKLKEENRLLDIVDPELTEYDEIEVLRFIKVSLFCTQAAAHHRPTMKQVEEMLCREVHLNDKALTEPGVYRWYAPRKLGSSSDETSTSQVKYEKPENPDVTSTHFSGTDIITEMIPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2020 378 CDD STKc_IRAK 50 316 - -
Glsi07g2020 378 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Glsi07g2020 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Glsi07g2020 378 Pfam Protein kinase domain 45 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2020 378 MobiDBLite consensus disorder prediction 339 365 - -
Glsi07g2020 378 SUPERFAMILY Protein kinase-like (PK-like) 22 314 IPR011009 -
Glsi07g2020 378 FunFam cold-responsive protein kinase 1 16 119 - -
Glsi07g2020 378 MobiDBLite consensus disorder prediction 340 365 - -
Glsi07g2020 378 Gene3D Transferase(Phosphotransferase) domain 1 120 327 - -
Glsi07g2020 378 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 347 - -
Glsi07g2020 378 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Glsi07g2020 378 ProSiteProfiles Protein kinase domain profile. 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2020 378 Gene3D Phosphorylase Kinase; domain 1 13 119 - -
Glsi07g2020 378 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2020 Glsi-ChrGlsi07 64427261 64433084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2020 24 329 Receptor kinase-like Gene Family AT1G56120 51.935 6.06e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi07g2020 Pkinase 3.2e-47 CL0016