Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1965 ATGAGTTGGGGAATTGAACCTCTCTCACCATCCTCCTATCTTCAGAGTTCTAATTGGTTGTTCCAGGAAAGCAAGGGAACCAAATGGACTCCAGAAGAGAACAAGAGGTTTGAGACCGCTTTGGCTTTGTATGATAAGGATTCACCAGATCGTTGGGTGAGGGTGGCAGCCATGATTCCTGGCAAAACTGTAAGTGATGTGATCAAACAGTACAAAGAACTGGAAGAAGATGTAAGCGTCATTGAGGCAGGGTTGATCCCAATACCTGGGTACAGTAGTAGTTCTTTCACATTGGAGTGGGTCAACAACCATGGCTTTGATGATTTCAAGCAATCTTATACTGCTGGTGAGAAAAGGGGTACCATCACTCGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAGGAGCACAGGCAATTTCTTATGGGACTCAAGAAGTATGGTAAAGGGGACTGGAGAAACATCTCTCGTAATTTTGTGACCTCGAGGACACCTACTCAGGTAGCGAGTCATGCTCAGAAGTATTTCATCAGACAGGTTTCAGGAGGGAAAGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTACCAGCAGAAACAAAATCTCCTTCATCAGACGGTAACACTGACAGACCTGCTTCTTCAAATAATTCCACGAAGCTCGTGAATCTACATCAGAATCAGAAACTGTATGGCATGATTAAGCAGGAATATGACCACTGGAACTTACCATATGATGAAGTGCCAATGGTTTTCAGTCCCACAAATGGGAACATGATCTTGGCACCATTTTGTGGGATATCTTCCTATGTATCTAAACCACAGGAGCAGTGTTTACTCAGAGGTACCTCCATGGATGTGACTTCGGACCTTATGATACTATTTTCAAATGCAACCGATGCGGCATCCTTGAACTATGAATATATAATGGAGAGGGTTTAG 963 0.4403 MSWGIEPLSPSSYLQSSNWLFQESKGTKWTPEENKRFETALALYDKDSPDRWVRVAAMIPGKTVSDVIKQYKELEEDVSVIEAGLIPIPGYSSSSFTLEWVNNHGFDDFKQSYTAGEKRGTITRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQVSGGKDKRRSSIHDITMVNLPAETKSPSSDGNTDRPASSNNSTKLVNLHQNQKLYGMIKQEYDHWNLPYDEVPMVFSPTNGNMILAPFCGISSYVSKPQEQCLLRGTSMDVTSDLMILFSNATDAASLNYEYIMERV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1965 320 SMART sant 132 182 IPR001005 -
Glsi07g1965 320 SMART sant 25 77 IPR001005 -
Glsi07g1965 320 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Glsi07g1965 320 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 250 IPR043363 -
Glsi07g1965 320 MobiDBLite consensus disorder prediction 200 228 - -
Glsi07g1965 320 Gene3D - 21 88 - -
Glsi07g1965 320 FunFam transcription factor MYB1R1 134 185 - -
Glsi07g1965 320 FunFam Transcription factor SRM1 21 88 - -
Glsi07g1965 320 CDD SANT 135 180 IPR001005 -
Glsi07g1965 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Glsi07g1965 320 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Glsi07g1965 320 CDD SANT 28 74 IPR001005 -
Glsi07g1965 320 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Glsi07g1965 320 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Glsi07g1965 320 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Glsi07g1965 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Glsi07g1965 320 Gene3D - 134 184 - -
Glsi07g1965 320 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Glsi07g1965 320 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Glsi07g1965 320 MobiDBLite consensus disorder prediction 204 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1965 Glsi-ChrGlsi07 63413119 63414427 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g1965 Myb_DNA-binding 4.3e-12 CL0123