Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1949 ATGATTGTTGCTATGGACTTGAATGCCTCACCAGTACCCGAGGAAGATGAAGATACTTTTGAGGGACATATAGAACAGTATACTCAACCAGAAGAACGCATAGAAACTGCCGTCGATATAGCACGTCGGGAGCGTGAAGAAAGGAAAAGGCGACTGAAAAGAGAACGGTCCGATGATAGACCTGTGCATGTATCGCAGTCAACTGGTTATGACCAGATGTTTCATACAAAGATCATTAAGTCATATGATAAAAGTAGGCTTCCTCCGGGTTGGTTGGATTGCCCTTCATTTGGTCAGGAAATTTATGGCATGATTCCTTCCAAAGTTCCACTTGGTGAATCATTCAATGACTGTATTGCTCCTGGTAGAAGATACTCATTTAAACAAGTGATACATCAACAAAGAGTTTTAGGGAGGAAACTTGGTTTGGTAATTGATTTAACAAATACTACTCGATACTATCCAGTGTCAGATTTAAAGAAAGAGGGTATCAAGCATGTTAAGATTCAATGCAAGGGGCGTGATTCTGTACCTGATAATTTATCTGTGAATCAGTTCGTCTATGAGGTTATTCAATTTCTATCACGTCAAAAACAGTCGAAGAAGTATATACTCGTTCATTGTACACATGGACATAATCGTACAGGATACATGATCATCCATTACCTTATGCGCTCTATGTCAATGTCTGTCACTCAGGCAATAAAAATATTTTCTGATGCACGCCCTCCAGGAATTTATAAACCTGATTACATTGATGCTTTGTACACGTTTTATCATGAAAAAAAGCCGGAAATGGTAGTTTGTCCTCCTACTCCAGAGTGGAAGAGATCTTCTGAACTTGATCTCAATGGTGAAGCAGTTCTAGATGATGATGATGATGATGGAGCACCAGACCCTACTTTGCATGAAAACCATGAGACAGATGCAAGAATGACAAATGATGATGTTTTGGGAGATGAGATACCAAGTGATCAACAAGATTCATTTCGACAGTTTTGTTATCAATCACTTAAATTGGGTGTTGGGGCCAGAGGACATGCACAATTTCCAGGATCACACCCAGTTTCTCTTAACAGGGATAATTTACAATTATTACGGCAGCGTTATTATTATGCAACATGGAAAGCTGATGGAACGAGATATATGATGCTAATAACAATGGATGGATGTTTCTTGATTGATAGAAATTTCAATTTTCGAAGGGTCCAAATGAGGTTTCCCTGTAGGGGAACAAATGAAGTTTTGGCTGAGAAGACTCACCACTACACTTTACTTGATGGGGAGATGATTATTGATACATTGCCAGATTCACAGAAGCAAGAGAGGAGATACCTTATATATGATCTGATGGCAATTAACCAAGTATCAGTAATAGAGCGACCATTCTATGAACGGTGGAGGATGCTTGAGAAAGAGGTGATTGAACCTAGGAATCTGGAACGGCAAAATATGTACCAGAGCAGGAATCCTTACTATAGATATGACCTTGAACCGTTCAGGGTGCGGAGAAAAGATTTTTGGTTGCTCTCTACTGTCACAAAGCTTTTAAAAGAATTCATTCCAAGACTCTCGCATGATGCAGATGGCCTCATATTTCAGGGTTGGGATGATCCTTATATACCTCGCACTCACGAAGGCCTCCTGAAGTGGAAATATCCTGAGATGAATTCAGTTGATTTTCTCTTTGAGGTTGATGATGATCGTCAGTTACTTTTTCTTAATGAACGAGGAAAGAAGAAACTCATGGAGGTTAATAGGGTTGCATTTAAAGATGGTTCAGATCCCTTGCTTTATTCGGGAAAGATCATAGAGTGTTCTTGGCATGCTGATGAACAGGAATGGGTATGCATGCGAATCAGGACAGATAAATCAACTCCAAATGAATTTAATACTTACAACAAGGTGATGCGGAGTATAAGAGACAATATCACAGAGGATGTCTTGTTGAATGAAATATATGAGATAATTCGCCTTCCCATGTATGCAGACCGGATAAAAATGGATAGCAAAGCCAATCAGCATGCTAGTATGGCACGGCGGAGGTGA 2049 0.3973 MIVAMDLNASPVPEEDEDTFEGHIEQYTQPEERIETAVDIARREREERKRRLKRERSDDRPVHVSQSTGYDQMFHTKIIKSYDKSRLPPGWLDCPSFGQEIYGMIPSKVPLGESFNDCIAPGRRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYPVSDLKKEGIKHVKIQCKGRDSVPDNLSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRSMSMSVTQAIKIFSDARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSELDLNGEAVLDDDDDDGAPDPTLHENHETDARMTNDDVLGDEIPSDQQDSFRQFCYQSLKLGVGARGHAQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCFLIDRNFNFRRVQMRFPCRGTNEVLAEKTHHYTLLDGEMIIDTLPDSQKQERRYLIYDLMAINQVSVIERPFYERWRMLEKEVIEPRNLERQNMYQSRNPYYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDPYIPRTHEGLLKWKYPEMNSVDFLFEVDDDRQLLFLNERGKKKLMEVNRVAFKDGSDPLLYSGKIIECSWHADEQEWVCMRIRTDKSTPNEFNTYNKVMRSIRDNITEDVLLNEIYEIIRLPMYADRIKMDSKANQHASMARRR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1949 682 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Glsi07g1949 682 MobiDBLite consensus disorder prediction 299 313 - -
Glsi07g1949 682 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 276 IPR029021 -
Glsi07g1949 682 CDD Adenylation_mRNA_capping 342 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi07g1949 682 MobiDBLite consensus disorder prediction 31 62 - -
Glsi07g1949 682 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 184 253 IPR000387 GO:0016311|GO:0016791
Glsi07g1949 682 SUPERFAMILY Nucleic acid-binding proteins 555 667 IPR012340 -
Glsi07g1949 682 Pfam mRNA capping enzyme, C-terminal domain 557 650 IPR013846 -
Glsi07g1949 682 PIRSF mRNA_capping_HCE 73 682 IPR017074 GO:0004484|GO:0006370|GO:0140818
Glsi07g1949 682 ProSiteProfiles Dual specificity protein phosphatase domain profile. 114 265 IPR020422 GO:0006470|GO:0008138
Glsi07g1949 682 FunFam mRNA capping enzyme family protein 551 659 - -
Glsi07g1949 682 ProSiteProfiles ATP-dependent DNA ligase family profile. 436 580 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Glsi07g1949 682 MobiDBLite consensus disorder prediction 31 66 - -
Glsi07g1949 682 FunFam mRNA capping enzyme family protein 83 297 - -
Glsi07g1949 682 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi07g1949 682 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 315 553 - -
Glsi07g1949 682 MobiDBLite consensus disorder prediction 286 313 - -
Glsi07g1949 682 Pfam Dual specificity phosphatase, catalytic domain 139 259 IPR000340 GO:0008138|GO:0016311
Glsi07g1949 682 Gene3D - 551 659 IPR012340 -
Glsi07g1949 682 SMART dsp_5 121 261 IPR020422 GO:0006470|GO:0008138
Glsi07g1949 682 Gene3D DNA ligase/mRNA capping enzyme 313 550 - -
Glsi07g1949 682 PANTHER MRNA-CAPPING ENZYME 82 664 - -
Glsi07g1949 682 FunFam mRNA capping enzyme, putative 313 550 - -
Glsi07g1949 682 Coils Coil 38 58 - -
Glsi07g1949 682 CDD RNA_5'-triphosphatase 90 256 - -
Glsi07g1949 682 Gene3D Protein tyrosine phosphatase superfamily 83 297 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1949 Glsi-ChrGlsi07 63125668 63160734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1949 1 682 Protein tyrosine phosphatase (PTP) family AT3G09100 69.869 0.0 961