Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1921 ATGGAAACGGAACAAACTACCGTAGTCGACCTCGAAGGAGGCCCAGCCGGAGACGTTGGTGGTGACGGCGCAAGTGGTGATGAGGGACTGACGGGCTCAGGCGAAGGGCGTGGAACTAGCTCCCGCGGGGCCAGAGACAGAGTGAAGGGGCCTTGGTCTCCGGAAGAGGACGCGATTCTGAGTCGCCTTGTGAGCAAGTTCGGCGCGCGAAATTGGAGCTTAATTGCTCGTGGGATCGCCGGACGATCCGGCAAATCTTGCCGGCTCCGGTGGTGTAATCAGCTCGATCCAGCTGTCAAGCGCAAGCCCTTTACCGACGAGGAGGACCGAATCATAGTTTCTGCACATGCTATCCATGGGAACAAGTGGGCAGCCATTGCCAGGCTTCTACCTGGAAGAACAGATAATGCCATTAAAAACCACTGGAATTCCACTTTGAGGCGTCGAGGAGTGGAACATGATAAGATTAAGTTAGAACCCTGCAACTTAGTGGAAGATGTTAGCTTGGACAAAGCAAAGGCATCATCTGAAGAAACCATGTCATGTGGAGATGTTAATTCCTTGAGATCCTCAGAAGGAAGAGATGCCAGTTCTATGGAGATTTTGGATGATAAATATGAAGACAAAGCACAGACAGAGGGTCTATTAATCCACGAAGTCAAGGATCCACCTACCCTTTTCCGACCAGTAGCACGAGTTAGTGCTTTTAGTGTATATAATTCTTTGGATGGTTTACAGCCTTCAACATTAATACAAGGGCCTAATCTAAAGCAAGGACCCCATTTTCAAGCATCAAAACCAGATATTGAAATTTGTAAGATGCTCGAAGGAATTTATGGCGACCGGTCAGTGCCTCACCAGTGTGGCCATGGCTGCTGTGCTGCTTCAAATGGTATAAAACCTAATGCCTCTTTGCTGGGGCCAGAATTCTTTGACTTTTCAGAACCTCCATCTTTCCCAAGTTTTGAGTTGGCTGCTATAGCTACAGATATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAAAATAGTAGTGTCAAAATGATGGGGGACGCAGCTGGTAGGGTAATATCTCATGGATCTCAAGTTCATATTGACCATTAG 1104 0.4774 METEQTTVVDLEGGPAGDVGGDGASGDEGLTGSGEGRGTSSRGARDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVEHDKIKLEPCNLVEDVSLDKAKASSEETMSCGDVNSLRSSEGRDASSMEILDDKYEDKAQTEGLLIHEVKDPPTLFRPVARVSAFSVYNSLDGLQPSTLIQGPNLKQGPHFQASKPDIEICKMLEGIYGDRSVPHQCGHGCCAASNGIKPNASLLGPEFFDFSEPPSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDAAGRVISHGSQVHIDH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1921 367 MobiDBLite consensus disorder prediction 1 52 - -
Glsi07g1921 367 CDD SANT 51 93 IPR001005 -
Glsi07g1921 367 SUPERFAMILY Homeodomain-like 46 142 IPR009057 -
Glsi07g1921 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 150 IPR017930 -
Glsi07g1921 367 SMART sant 100 148 IPR001005 -
Glsi07g1921 367 SMART sant 48 97 IPR001005 -
Glsi07g1921 367 CDD SANT 103 146 IPR001005 -
Glsi07g1921 367 FunFam MYB transcription factor 49 100 - -
Glsi07g1921 367 PANTHER MYB PROTEIN-RELATED 49 185 - -
Glsi07g1921 367 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Glsi07g1921 367 FunFam Transcription factor MYB44 103 149 - -
Glsi07g1921 367 Gene3D - 103 149 - -
Glsi07g1921 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 99 IPR017930 -
Glsi07g1921 367 ProSiteProfiles Myb-like domain profile. 44 95 IPR001005 -
Glsi07g1921 367 Gene3D - 48 100 - -
Glsi07g1921 367 Pfam Myb-like DNA-binding domain 52 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1921 Glsi-ChrGlsi07 62268118 62273646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1921 38 367 MYB Transcription Factor Family AT3G09230 54.706 5.03e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g1921 Myb_DNA-bind_6 1.1e-15 CL0123