Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1920 ATGTCAACCGTACAGATGTCCCGTATAGATTTAGAGCGAGGAAGTCACCGGCGTCCGTTGGCCGGAAGTGACATGAGCGATGAGGGGAGCGTGTGCTTCTCCGACGCCGATGATGTCTCTTGCTACTCTCATTTCTATTCAACAAACGGTGGCTCATACGATGAGTACAGCTTTGGTTACGTTTCTGATCCTGAGGCTAGGGGTGTTCCGGAATCTGGGAGAGCTTCTTCTGTTACTGATTGTTCGGTGGTGGTGGAAATTGAAAGTGGGGTTCCGGAGATTAAGGTGCATTTGGCTAAAGTAGAGAGAGATTGTAGGATTTGTCACCTGGGTTTGGAGAGTGATAGCCATGAGTCTGGGGTTCCAATTGAATTGGGTTGCTCTTGCAAGGATGATTTAGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATCAAGGGGAATAGGACCTGCGAAATTTGTCATTCAGTTGCACGGAATGTTTATGGAGGGAATGAGGAGTTAACGGAGCATTCAAGTGATAGCAACAATAATGCTCCTGCTGCAGCAACCACGGTCTCAACACTGGCTCCTCCTGCAGAAACTCGAAGATTCTGGCATGGCCACCGGTTCCTGAATTTCCTGCTGGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTCTTTCACTTTAAAGTACCATCATCTTAA 696 0.4784 MSTVQMSRIDLERGSHRRPLAGSDMSDEGSVCFSDADDVSCYSHFYSTNGGSYDEYSFGYVSDPEARGVPESGRASSVTDCSVVVEIESGVPEIKVHLAKVERDCRICHLGLESDSHESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGGNEELTEHSSDSNNNAPAAATTVSTLAPPAETRRFWHGHRFLNFLLACMVFAFVISWLFHFKVPSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1920 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 165 IPR013083 -
Glsi07g1920 231 SUPERFAMILY RING/U-box 102 160 - -
Glsi07g1920 231 PANTHER ZINC FINGER, RING-CH-TYPE 22 230 - -
Glsi07g1920 231 CDD RING_CH-C4HC3_MARCH 105 157 - -
Glsi07g1920 231 SMART ringv_2 104 157 IPR011016 GO:0008270
Glsi07g1920 231 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Glsi07g1920 231 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Glsi07g1920 231 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1920 Glsi-ChrGlsi07 62257729 62260932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1920 63 231 C3H Transcription Factor Family AT5G05830 58.824 4.98e-66 201