Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1919 ATGGGGGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTTCCACTCTCCCCTCAAATCCTCTGTCCTTGAATCCTCCGACCTGGAAAATGGGGGCAAAAGTGAACGAAACTTATGGCCCAGTTTTGGCGAGTTCAGCTTGGAGCAATTGAAGAACGCCACTGATGGGTTCTCCTCCGAAAACATAGTGTCCGAGCACGGCGAGAAAGCTCCTAATGTTGTTTACAAAGGGATACTCGATGACGGCAACTTGATCGCCATCAAACGCTTCAACAAGTTCGCCTGGCCCGATTCTCGCCAATTCCTCGAGGAAGCAAGACAAGTGGGAAGTTTGAGAAGCCAGCGATTGGCGAACTTGATTGGTTGTTGCAATGAAGGAGACGAGAGGTTACTAGTAGCGGAGTTTATGCCCCATGAAACCCTGGCAAAGCATCTCTTTCACTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCGTTGTACTTGGCACAAGCTCTAGAGTACTGCAGTAGTAAGGGAAGGGCTTTGTACCATGATCTAAATGCATACAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTGTCTTGCTTTGGACTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCCGAGTACTTGAGGACAGGTAGAGTGACACAGGAGAGTGTAGTTTACAGTTTTGGAACCCTCTTATTAGATCTTCTGAGTGGTAAACATATTCCTCCCAGCCATGCACTTGACCTGATTCGTAGCAAAAACTTTCTGATGTTGATGGATTCTGCCTTGGAGGGTCATTTTTCGAAGGACGATGGAACTGAGTTGGTGTGTTTGGCTTCTCGTTGTTTACAATATGAAGCTCGTGAGAGGCCGAATGCAAAGTCCATTGTTCAATCTCTAATGTCACTTCAGAAAGGAACAGAGGTCCCCTCATATGTTTTGATGGGTTTTCGGCATGAAACTGCTTCTTCTATAAAGCCATTGTCATTGACACCTTTCGGCGAGGCTTGTTTGAGGCTTGATCTTACTGCCATACATCAAATATTAGAGAAGATTGGGTACAAGGACGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACCAGTCAAATGCAAGAGACCTTGAATTTGAAGAAACATGGAGACACCGCCTTTCGAGCTAAGGACTTTGTCACCGCCGTTGACTGCTATACCCAATTCATAGATGGAGGGACCATGGTGTCACCAACTGTGTATGCAAGGCGCTGCTTATCATATTTGATGAGTGACAAGCCTCAGGAAGCTTTGGGGGATGCTATGCAAGCCCAAGCTGTGTCTCCTGAGTGGCCTACCGCTTTGTATCTTCAAGCAGCTTGTCTTCTCAGCCTTGGAATGGAAAATGACGCACAAGAGACTCTCAAAGATGGGACAAACATGGAAGCCAGGAAAACCAAAAACTGA 1476 0.4675 MGARCSKFSLCWFHSPLKSSVLESSDLENGGKSERNLWPSFGEFSLEQLKNATDGFSSENIVSEHGEKAPNVVYKGILDDGNLIAIKRFNKFAWPDSRQFLEEARQVGSLRSQRLANLIGCCNEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTQESVVYSFGTLLLDLLSGKHIPPSHALDLIRSKNFLMLMDSALEGHFSKDDGTELVCLASRCLQYEARERPNAKSIVQSLMSLQKGTEVPSYVLMGFRHETASSIKPLSLTPFGEACLRLDLTAIHQILEKIGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAVDCYTQFIDGGTMVSPTVYARRCLSYLMSDKPQEALGDAMQAQAVSPEWPTALYLQAACLLSLGMENDAQETLKDGTNMEARKTKN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1919 491 Gene3D Transferase(Phosphotransferase) domain 1 136 327 - -
Glsi07g1919 491 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Glsi07g1919 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Glsi07g1919 491 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Glsi07g1919 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Glsi07g1919 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Glsi07g1919 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 20 490 IPR045845 GO:0004672|GO:0009742
Glsi07g1919 491 SUPERFAMILY Protein kinase-like (PK-like) 35 320 IPR011009 -
Glsi07g1919 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Glsi07g1919 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Glsi07g1919 491 ProSiteProfiles Protein kinase domain profile. 59 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1919 Glsi-ChrGlsi07 62252374 62256978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1919 44 322 Glycoside Hydrolase AT3G07070 34.084 4.28e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Glsi07g1919 PK_Tyr_Ser-Thr 3.5e-26 CL0016