Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1908 ATGGCTGTAGAGGAAGATACCGACCGGGAATATGTGCCAAAAAAGGAGAAGCCACCTTCAGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGACTTTGATGAAAGCTCTAATGAGGCCTGGAGGGGGGGACTCGACACCTTCGGACGGTGACCAGGTTATATATCATTGCACAATTCGAACTTTGGATGGAGTAGTTGTGGAATCTACCAGATCAGAATTTGGAGGCAAGGGCACCCCCATCAGACATGTCTTGGGCAAAAGCAAGATGATATTGGGTTTATTAGAAGGAATTCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATGGCGAGGAGGATTGTCCTCTTTCTGCTCCTGATGATTTTCCAAAGGATGATGAACTTCATTTTGAAACTGAACTGTTAGATTTTTTTAAAGCCAAGGTTATCACTGATGATTTGGGAATTATAAAAAAGGTAATACATGAAGGGCAGGGTTGGGAAACTCCTCGAGAACCTTATGAAGTGAAGGCTTGGATTTCGGCAAAGACAAGTGCTGGGATGTTGATTATGTCACACACAGAAGGAGAACCATATTTCTTTACATTGGGAAGATCAGAGGTACCTAAAGGTCTTGAAATGGGGATAGGGACAATGGCACGGGAAGAGAAGGCTGTAATATTTGTTACCAGCCAGTATTTAACTCAGTCTCCTCTGATGCCACTTATAGAAGATTATGAAGAGATCCAGTTTGAAGTGGAGCTCGTCCACTTTATTCAAGTGAGGGACATGCTTGGAGATGGTCGCTTAATAAAACGCCGGATTCGTGATGGGACAGGCGAGTTTCCAATGGATTGCCCTCTTCATGACAGTCTACTTCGCGTTCATTACCAGGGCATGGTTCTCAATGAAGAAAAGAGGGTATTCTATGACACAAAAGTTGATAATGATGGTCAGCCATTGGAGTTCTGTTCTGGTGAAGGGCTTGTCCCCGAGGGGTTTGAAATGGCTGTTCGTCTGATGCTGCCTGGAGAGGTAGCTCTTGTCACTTGTCCCCCGGACTATGCTTATGACAAGTTTCCAAGGCCAGCAAACGTTCCTGAGGGTGCTGATGTTCAATGGGAGATTGAGCTTCTTGGTTTTGAAATGCCCAAGGACTGGACTGGATTGGACTTTAAAAGTATAATGGAGGATGCTGAGAAGACCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCCAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAGGAAGGAAAAGTATTTCTAGATACACGTAATTTGTTATATCTAAATGTTGCTGCATGCTATCTGAAATTGGGAGAATGTAGAAAGTGCATTGAGACTTGCAATAAGGTTTTGGATGCAAACCCTGCACATGTCAAGGGTCTTTACCGTCGAGGAATGGCCTACATGGCAGCTGGAGATTTTGAAGAAGCAAGAAATGATTTCAACATGATGATAAAAGTTGACAAGTCGGCTGAACCAGATGCAACAGCAGCTCTTAATAAACTGAAGCAGAAGGAGCAGGAAGTCGAGAGGAAGGCTCGAAAGCAATTTAAAGGCCTTTTCGACAAGAAGCCGGGAGAAATTGCAGAAGTTAAAGCTGATGAGGATAGCGATCAGATAACAAGTGAAAGCAAGGAGGGTGAAGTACATGGGGACTCAGATGGAACAAGTTCAGAGGATTCACATGAAGCTGCACCTGAGGATGCCCCGATGGGTTGGTTCCCTCGCTTTTGGCCTTCCAGCAAAAGATTTTTATCATCCATCGGCCTTCAAAGATGTACCATTCTGTGA 1869 0.4393 MAVEEDTDREYVPKKEKPPSEDEKRKKKIVPGTLMKALMRPGGGDSTPSDGDQVIYHCTIRTLDGVVVESTRSEFGGKGTPIRHVLGKSKMILGLLEGIPTMLKGEVAMFKMKPQLHYGEEDCPLSAPDDFPKDDELHFETELLDFFKAKVITDDLGIIKKVIHEGQGWETPREPYEVKAWISAKTSAGMLIMSHTEGEPYFFTLGRSEVPKGLEMGIGTMAREEKAVIFVTSQYLTQSPLMPLIEDYEEIQFEVELVHFIQVRDMLGDGRLIKRRIRDGTGEFPMDCPLHDSLLRVHYQGMVLNEEKRVFYDTKVDNDGQPLEFCSGEGLVPEGFEMAVRLMLPGEVALVTCPPDYAYDKFPRPANVPEGADVQWEIELLGFEMPKDWTGLDFKSIMEDAEKTRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFLDTRNLLYLNVAACYLKLGECRKCIETCNKVLDANPAHVKGLYRRGMAYMAAGDFEEARNDFNMMIKVDKSAEPDATAALNKLKQKEQEVERKARKQFKGLFDKKPGEIAEVKADEDSDQITSESKEGEVHGDSDGTSSEDSHEAAPEDAPMGWFPRFWPSSKRFLSSIGLQRCTIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1908 622 FunFam Peptidylprolyl isomerase 8 150 - -
Glsi07g1908 622 SUPERFAMILY TPR-like 398 537 IPR011990 GO:0005515
Glsi07g1908 622 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515
Glsi07g1908 622 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 149 262 - -
Glsi07g1908 622 MobiDBLite consensus disorder prediction 1 29 - -
Glsi07g1908 622 FunFam Peptidylprolyl isomerase 389 545 - -
Glsi07g1908 622 MobiDBLite consensus disorder prediction 554 592 - -
Glsi07g1908 622 SUPERFAMILY FKBP-like 266 383 - -
Glsi07g1908 622 SUPERFAMILY FKBP-like 150 260 - -
Glsi07g1908 622 Gene3D Tetratricopeptide repeat domain 395 549 IPR011990 GO:0005515
Glsi07g1908 622 MobiDBLite consensus disorder prediction 554 599 - -
Glsi07g1908 622 Pfam Tetratricopeptide repeat 485 514 IPR013105 -
Glsi07g1908 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 194 261 IPR001179 GO:0003755
Glsi07g1908 622 Coils Coil 521 541 - -
Glsi07g1908 622 Gene3D - 150 261 IPR046357 GO:0003755
Glsi07g1908 622 SUPERFAMILY FKBP-like 26 151 - -
Glsi07g1908 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 51 147 IPR001179 GO:0003755
Glsi07g1908 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 384 IPR001179 GO:0003755
Glsi07g1908 622 SMART tpr_5 484 517 IPR019734 GO:0005515
Glsi07g1908 622 SMART tpr_5 401 434 IPR019734 GO:0005515
Glsi07g1908 622 SMART tpr_5 450 483 IPR019734 GO:0005515
Glsi07g1908 622 FunFam Peptidylprolyl isomerase 262 386 - -
Glsi07g1908 622 Gene3D - 262 386 IPR046357 GO:0003755
Glsi07g1908 622 Gene3D - 2 149 IPR046357 GO:0003755
Glsi07g1908 622 FunFam Peptidylprolyl isomerase 151 261 - -
Glsi07g1908 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 293 381 IPR001179 GO:0003755
Glsi07g1908 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 144 IPR001179 GO:0003755
Glsi07g1908 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 258 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1908 Glsi-ChrGlsi07 62147800 62157279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1908 34 549 Calmodulin-binding Proteins AT5G48570 31.369 4.00e-65 222