Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1886 ATGGCGGAGGGTTTTGAGCCTTACCATGTTCCCCAGCAAAGCAGAAGAGATAAGCTCAGAGTTGTGGCTCAGAACCAACCGGGTCTTACTGAATCCTCACTTAACCTTCCTCCTGGATGTTCAGGTTTAATTCCTTTGTACGATCCTTCTCTGATTTCCTCTGGTTTGCTCGCATTCCATAACCAGAATACTCCACTTTCTGCAAACAACGAAGCTTATAAAGCAAACACAGGTTGTGGTGCCAAGGAAGGAGGCTCCAATTTGATGGGATTTGCCGGAGGGGTCATGAATGGTTCTCCTTCTTCGACCTCGCCTTCGGTTTCTCACCATGCTTACTTGCATCCTGAATCGTCGTCGTTGCCCATAAACCTTGGTACAATTCAAGTTATTAACAATAACCCATTTGTTTACCCGGCGCAAAACCTTGAGAACCTTCGGGAATTTGATCAAAGCTACAATGGCAGTGAAATAATGGTGTTTAAGCCAGAACCGTTGTCTTTGTCTCTGTCATCCCACAATACCAACCACACTAATCTTCCACTTGAGTTGAATCTACAGCGATATGGGCCTATAATCTATGGCGATAAGGTTAGTGGTGGCTGTGTGATTCCGGGTTTAGTTGGAGGAGGCAGTGCTTCTGCCTCGGATGAAGTTTCGAGGAGTTCAGTCCCTCTTGGGCCATTTGTGGGTTATGCTTCGATATTGAAGGGATCGAGATTCTTGAAGCCCGCACAGCAATTATTGGAAGAGTTATGCGATGTAGGGGGCCGTGGAATTTACGCCGAAAAGATAACGGCGGATACATCGTTGATGGAACCTCCTTCTGAGACTTTAAGTGCTAGTGGAATCGGTGACGATCCGCTTGGGGATGGGGGCGAGGGTCGGAAGAAGAAGTCCAAGCTATTAACTATGCTCGACGAGGTTTTCAGGAGGTACAGGCAGTACTATCAACAGATGCATGTGGTGATAACTTCATTCGAGTATGTTGCAGGCCTGGGTAATGCAGCTCCCTATGCAAGCTTGGCTATAAAAGCCATGTCCAAGCATTTTAGATGCTTGAAGAGTGCAATTACTGACCAGCTCTATTTCACCAACAAGGCTCATCTTAACCTAAACAACCGGAAGGATGAATCTCCAAGGCTTGGCGACAATGATGGAGGCCCTTCTAGCCAAAGACCTGTTTACAATCCAGGGTTCATTGATCACCAACCTCCAACTTGGCGACATCAAAGAGGACTCCCTGAGCGTGCTGTAACTGTTCTCAGGGCATGGTTGTTTGAGCACTTTCTGCACCCCTATCCTACTGATACGGACAAACTAATGTTGGCTAAACAAACTGGTCTGTCTCGTAGTCAGGTGTCAAATTGGTTTATTAATGCTAGAGTTAGGCTCTGGAAACCGATGGTGGAAGAAATACATATGCTCGAAACACGACAAGCTCAGAACAATTCGCGAAGGGAAGAACATCATAGGAGCAGGTTGAGTGATCATTTACCTTTATCGGATAACTCTCTTGTTTCAGAGAATCCATCTACCTCCATGAATAAATTTCTGGATGCCCCTTATAAACATATTAGAAATGAACTCTCTAATATACCAGCGAAGAGCCAGGAACAACCAAATCTGCCTTATACAAGCAATCATCCAGGAAATATTGGAATGAGCATGGGTGCTGCAAGCAATAATGGTGTCTCACTGACACTGGGTCTTCATCAAAATCCTGGGATTGGGTTATCTGAATCATCCTTTCCCCTGAGTGCAGCTCAGCGATTTGGTGTTGCCCTTGAACCGAATAATGAGGGTTATGTTATGGGTGGTTTTGAATCACAAAATCAGCATTTTGGAAGAGATGTTATTGAAGGTCAACTGTTACATGACTTTGTGGGCTGA 1890 0.4529 MAEGFEPYHVPQQSRRDKLRVVAQNQPGLTESSLNLPPGCSGLIPLYDPSLISSGLLAFHNQNTPLSANNEAYKANTGCGAKEGGSNLMGFAGGVMNGSPSSTSPSVSHHAYLHPESSSLPINLGTIQVINNNPFVYPAQNLENLREFDQSYNGSEIMVFKPEPLSLSLSSHNTNHTNLPLELNLQRYGPIIYGDKVSGGCVIPGLVGGGSASASDEVSRSSVPLGPFVGYASILKGSRFLKPAQQLLEELCDVGGRGIYAEKITADTSLMEPPSETLSASGIGDDPLGDGGEGRKKKSKLLTMLDEVFRRYRQYYQQMHVVITSFEYVAGLGNAAPYASLAIKAMSKHFRCLKSAITDQLYFTNKAHLNLNNRKDESPRLGDNDGGPSSQRPVYNPGFIDHQPPTWRHQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQNNSRREEHHRSRLSDHLPLSDNSLVSENPSTSMNKFLDAPYKHIRNELSNIPAKSQEQPNLPYTSNHPGNIGMSMGAASNNGVSLTLGLHQNPGIGLSESSFPLSAAQRFGVALEPNNEGYVMGGFESQNQHFGRDVIEGQLLHDFVG 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1886 629 Pfam Homeobox KN domain 424 463 IPR008422 GO:0003677|GO:0006355
Glsi07g1886 629 MobiDBLite consensus disorder prediction 498 513 - -
Glsi07g1886 629 SUPERFAMILY Homeodomain-like 409 474 IPR009057 -
Glsi07g1886 629 CDD homeodomain 407 468 IPR001356 GO:0003677
Glsi07g1886 629 FunFam BEL1-like homeodomain protein 9 410 472 - -
Glsi07g1886 629 Gene3D - 410 472 - -
Glsi07g1886 629 MobiDBLite consensus disorder prediction 480 497 - -
Glsi07g1886 629 MobiDBLite consensus disorder prediction 373 395 - -
Glsi07g1886 629 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 488 - -
Glsi07g1886 629 SMART HOX_1 407 471 IPR001356 GO:0003677
Glsi07g1886 629 SMART prehox3 229 359 IPR006563 -
Glsi07g1886 629 MobiDBLite consensus disorder prediction 477 513 - -
Glsi07g1886 629 ProSiteProfiles 'Homeobox' domain profile. 404 467 IPR001356 GO:0003677
Glsi07g1886 629 MobiDBLite consensus disorder prediction 272 296 - -
Glsi07g1886 629 Pfam Associated with HOX 234 358 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1886 Glsi-ChrGlsi07 61768230 61774087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1886 148 629 Homeobox Transcription Factor Family AT5G02030 48.924 4.07e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi07g1886 POX 4.5e-39 No_clan