Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1859 ATGGAACAGGGTCAATGTTGGATGTGGACCAAGAGGAAGTACTCAATGAGCTCTTATCTTACTTCATCAACTAACGCCTCCTATGATGATTCATGGGAAGAGCAAGCTTTTGCAGAAGATGCAGCTGGGTCTCTTGGTGGGTGCATATGGCCACCGAGATCATATACATGCAGTTTCTGCAGAAGAGAGTTCAGGTCAGCTCAAGCACTAGGGGGCCATATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAAACCTCGAGTCCCCAAAATGAAGTTCAAAATCCTTTCACCTCTTTGGGTTTTCTATACCCATCATCTCCTGTTTGTGGGTTGGCTTATAACACTAAACCTAATTCCGATCCTTCTGTTCTTGCTTCACCTTCCTCACGGCCACCTTCCAAGGCTTTATTAGCTTCATCATCAATTATTGAGAATTGCAGAGAGGAAACCCTGATCCCAACTCATAATTCTTCTGAATCTTGGTCCAAGTTAGCTGAAGAGAGATTATATTCACAAAAATTCAACCCTGAAGCTGAGAAGATCTCAAAGATATTGGGTTGTGGGTGTCTAAATAAGGGTGGAAATTATGTGCAGTTTGAGACAAAGGAAGAAGCTGCTATTAGTTGCAAGAAGAGGAGAACAGATATTGCTTCATCAATTCAATTCTTCCCAAAATCAAATTCATTTGATAGACATCATCGTGGGAAGGTGTTTGAATTTAGCTCTAGCTGCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCAAAGGCCCGAGGCCTTAGATATCTGCAGGCGAGATAATATGAAGATTGCAATTTTAGACAAGGTTGTGAGTTGGGTAGCTCAGTTGTATACAGAAAGGTATGGTGAAATATTGGGGGCCAGTGGCAGAGAAGCACATGGGGAGGAACTGTCATTTCCATGTTCACTTGAGGTTGAGAGGGGAATTGTAGAATAG 966 0.4255 MEQGQCWMWTKRKYSMSSYLTSSTNASYDDSWEEQAFAEDAAGSLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQTSSPQNEVQNPFTSLGFLYPSSPVCGLAYNTKPNSDPSVLASPSSRPPSKALLASSSIIENCREETLIPTHNSSESWSKLAEERLYSQKFNPEAEKISKILGCGCLNKGGNYVQFETKEEAAISCKKRRTDIASSIQFFPKSNSFDRHHRGKVFEFSSSCIEELDLELRLGQRPEALDICRRDNMKIAILDKVVSWVAQLYTERYGEILGASGREAHGEELSFPCSLEVERGIVE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1859 321 PANTHER OS07G0101800 PROTEIN 26 260 - -
Glsi07g1859 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Glsi07g1859 321 Pfam C2H2-type zinc finger 55 79 - -
Glsi07g1859 321 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Glsi07g1859 321 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Glsi07g1859 321 Gene3D Classic Zinc Finger 52 100 - -
Glsi07g1859 321 SMART c2h2final6 55 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1859 Glsi-ChrGlsi07 61320460 61323220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1859 31 120 C2H2 Transcription Factor Family AT2G37740 58.586 9.05e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi07g1859 zf-C2H2_6 6e-06 CL0361