LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g1831	ATGGTTGTGTCAGCCACCCAAGAGGCAATGGTGGAGGAAGTATTAATGGCTGCTTGGTCAGATAGTTCAGAGGATGACCTTCTGAGAGAGCTTTTAGATGATGGGTCTCCTCTTGAACCCAACACAAAAGCTTCAAATGAGGCTCAGGCCATTAACAGCTTCATCTCCAACATTTATTCAGGACCTACCATTTCAGATATTGAAAATGCTTTATCGTTCACCAACCAAAGAGAACATTCCCAGGAGCTCTCATTAGCCAGAGTTTCCATACTAGAAAGGGGCCTGAATAAGATTGAGAATAAGTACACTTTGAAAATCAAGTGCTTTGGTAATGGGATGGGAGATGATGGATATAAGTGGAGGAAGTATGGACAGAAATCTATTAAGAATAGTCCTAATCCTAGGAGCTACTATAGGTGCACCAACCCAAGGTGCAGTGCCAAAAAACAGGTTGAAAGATCCAATGAGGACCCAGATACTCTTATCATCACCTACGAAGGGCTCCACCTGCACTTTGCTTACCCATATATGGTTATGAGCCAGCCGCAACAATCCCAACCACCAACAAAGAAGCCCAAGACCACTATTTCCCAAGCCCAAGCCCAAGCCCAAGAATCCCAACATGTTCATGAAGCCCAGGAATCCCAAGGTGCTGTTACTTCCAGCCTGATGCTGTCCACTTTCCTGGACTCTCCACAGGGCAGTGCCCAAGAAAACATCGGACACCAAGGGTTGCTTGAAGACATGGTGCCATCAATGATTCGGAACCCTACAAGAAACAATAGGGCTCACTCAAACTTTTCTTGTTCCTCGTACCATTGTCCTCCAACTTCACCTCCTTCTGTGTCTTGGTCATCTAATTACAGCACCTCCTGTTATACTGTTGGCTTAAATTCTAGCATTTAG	906	0.4503	MVVSATQEAMVEEVLMAAWSDSSEDDLLRELLDDGSPLEPNTKASNEAQAINSFISNIYSGPTISDIENALSFTNQREHSQELSLARVSILERGLNKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYMVMSQPQQSQPPTKKPKTTISQAQAQAQESQHVHEAQESQGAVTSSLMLSTFLDSPQGSAQENIGHQGLLEDMVPSMIRNPTRNNRAHSNFSCSSYHCPPTSPPSVSWSSNYSTSCYTVGLNSSI	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g1831	301	SMART	WRKY_cls	114	173	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi07g1831	301	MobiDBLite	consensus disorder prediction	180	217	-	-
	Glsi07g1831	301	Coils	Coil	196	216	-	-
	Glsi07g1831	301	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	60	206	IPR044810	GO:0003700
	Glsi07g1831	301	Gene3D	WRKY domain	110	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi07g1831	301	SUPERFAMILY	WRKY DNA-binding domain	112	171	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi07g1831	301	ProSiteProfiles	WRKY domain profile.	109	174	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi07g1831	301	Pfam	WRKY DNA -binding domain	115	171	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi07g1831	301	FunFam	WRKY transcription factor	101	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g1831	Glsi-ChrGlsi07	60833438	60835762	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g1831	46	260	WRKY Transcription Factor Family	AT5G43290	46.383	4.89e-56	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi07g1831		WRKY	5.8e-26	CL0274