Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1819 ATGACTGAGCTTGAAGTTTCTCGCTCAGAGAAGAAGAAGAAGCACCGTAACAAAGACGATGCTCAAGACTCATTGAAACCAGTTGATGAGCCAACCCAGAAAGATATCGACTTCATGATTAAGCCACAGAGCTTCACTCCCTCGATTGATACCTCTCAGTGGCCGATACTCCTCAAGAACTATGACCGCCTCAATGTACGAACCGGACACTACACTCCCATTCCATCTGGTTACTCTCCCCTCAAGCGTCCTCTTACAGAGTATATCAAGTACGGTGTTCTCAATCTTGATAAACCCGCGAACCCATCTTCGCACGAGGTCGTCGCTTGGATCAAACGGATCCTCCGGGTGGAGAAAACGGGTCACAGTGGTACCCTGGATCCCAAGGTCACAGGGAACCTTATAGTTTGCGTTGATAGAGCTACCCGACTCGTGAAATCACAGCAGGGTGCTGGGAAAGAGTATGTCTGTGTCGCCCGATTGCACTCTGCGGTTCCAGATGTTGCGAAGGTGGTTCGAGCGCTCGAAACGCTCACTGGGGCTGTGTTTCAGCGCCCGCCACTGATTTCAGCTGTCAAGAGGCAGCTTAGGATTAGGACTATATATGAAAGCAAGCTTCTTGAGTACGACCCAGATAAGCATTTGGTTGTGTTCTGGATTTCCTGTGAGGCAGGTACGTATGTGAGGACTCTTTGTGTTCATTTGGGTTTGATTCTTGGTGTGGGAGGGCATATGCAGGAGCTTAGAAGGGTGCGATCGGGTATTATGGGTGAGAAAGATAACATGGTCACTATGCATGATGTCATGGATGCTCAATGGGTTTATGATAATTATAGGGATGAGAGTTATTTGAGAAGGGTTATTATGCCACTTGAAGTACTTTTGACGACTTATAAGAGATTGGTTGTGAAAGATTCAGCTGTTAATGCGATTTGTTATGGAGCAAAGCTAATGATTCCTGGGTTATTGAGGTTTGAGAATGATATTGAGGTTGATGAGGAAGTTGTACTTATGACTACCAAAGGTGAAGCAATTGCTTTGGGAATTGCGGAGATGACTACTGCTGTAATGGCAACTTGTGATCACGGTTCGGTGGCCAAGATTAAAAGGGTTGTGATGGATCGAGATACCTATCCAAGGAAATGGGGTCTAGGCCCAAAGGCATCAATGAAGAAGAAGTTGATTGCAGAAGGGAAGCTAGGTAAGCATGGGAAACCAAATGAGAATACTCCTCAAGAGTGGCTGAGGAATTTGGTTTTACCAACTGGTGGAGATAGTATGATTGCTGGTCTTGCTGCTTCATCTGAACCAGATGCAGTAAAAAAGGAGACTGTTGCAGAGGAGAGGGAAAAGATTAAGAGTGACCGTGATGGGGAGGGGCGTAAAAGAAAAATAGTTGATAGCAATGGAAGCCCTGTTTCTGTTCCCACTAAGAAGGTCAAAGTTGAAAAGGTTGAGGAGAAAACATTGAAGATCAAGAAGGTAAAAGAAGATCTTGTCGAGATTGAAGTTAAGAAGAAAGAGAAGAAGAAAAAGAAGGATAAAGTGAATGATGAAGTGTCATCTTCAGATGAGGAGAAAACTGGAAAGGAAGAGAAGAAGAAGAAGAAGAAGCACAAAGAAAAGGTAGAAGCTACTTCACCGGATACTAAGAAGTCTGAGAAGAAGAAAAAGGATAAAGTGAATGATGAAGTGTCATCTTCAGATGATGAGAAAACTGGAAAGGAAGAGAAGAAGAAGAAGAAGAAGCATAAAGAAAAGGTAGAAGCCACTTCACCAGATACCATTAAGTCTGAGAAGAAGAAAAAGAAGGACAAAGATTCTGAAGATAAGGCTAGTGAGTTACTTACAGAGGATGCAGATCAAAGTGAGAAAAAGAAGAAACATAAGAAAAAAACCAAAGATGCAGGGAAGGAATAG 1920 0.4349 MTELEVSRSEKKKKHRNKDDAQDSLKPVDEPTQKDIDFMIKPQSFTPSIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLTEYIKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVVRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVLLTTYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVDEEVVLMTTKGEAIALGIAEMTTAVMATCDHGSVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLGKHGKPNENTPQEWLRNLVLPTGGDSMIAGLAASSEPDAVKKETVAEEREKIKSDRDGEGRKRKIVDSNGSPVSVPTKKVKVEKVEEKTLKIKKVKEDLVEIEVKKKEKKKKKDKVNDEVSSSDEEKTGKEEKKKKKKHKEKVEATSPDTKKSEKKKKDKVNDEVSSSDDEKTGKEEKKKKKKHKEKVEATSPDTIKSEKKKKKDKDSEDKASELLTEDADQSEKKKKHKKKTKDAGKE 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1819 639 SUPERFAMILY PUA domain-like 298 379 IPR015947 -
Glsi07g1819 639 Gene3D PUA domain 51 382 IPR036974 GO:0003723
Glsi07g1819 639 CDD PUA_Cbf5 298 371 - -
Glsi07g1819 639 MobiDBLite consensus disorder prediction 587 626 - -
Glsi07g1819 639 CDD PseudoU_synth_hDyskerin 90 272 - -
Glsi07g1819 639 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 567 IPR004802 GO:0006396
Glsi07g1819 639 MobiDBLite consensus disorder prediction 1 33 - -
Glsi07g1819 639 Pfam DKCLD (NUC011) domain 51 108 IPR012960 -
Glsi07g1819 639 FunFam H/ACA ribonucleoprotein complex subunit CBF5 84 290 - -
Glsi07g1819 639 NCBIfam uncharacterized domain 2 294 370 IPR004521 GO:0003723
Glsi07g1819 639 MobiDBLite consensus disorder prediction 542 577 - -
Glsi07g1819 639 Coils Coil 485 526 - -
Glsi07g1819 639 SMART DKCLD_2 50 108 IPR012960 -
Glsi07g1819 639 MobiDBLite consensus disorder prediction 503 639 - -
Glsi07g1819 639 Pfam tRNA pseudouridylate synthase B C-terminal domain 229 295 IPR032819 -
Glsi07g1819 639 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 58 383 IPR004802 GO:0006396
Glsi07g1819 639 SUPERFAMILY Pseudouridine synthase 51 295 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Glsi07g1819 639 Gene3D Pseudouridine synthase 84 290 - -
Glsi07g1819 639 MobiDBLite consensus disorder prediction 440 466 - -
Glsi07g1819 639 MobiDBLite consensus disorder prediction 433 487 - -
Glsi07g1819 639 Pfam TruB family pseudouridylate synthase (N terminal domain) 112 228 IPR002501 GO:0006396
Glsi07g1819 639 ProSiteProfiles PUA domain profile. 298 373 - -
Glsi07g1819 639 MobiDBLite consensus disorder prediction 503 532 - -
Glsi07g1819 639 SMART pua_5 299 373 IPR002478 GO:0003723
Glsi07g1819 639 Pfam PUA domain 299 371 IPR002478 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1819 Glsi-ChrGlsi07 60629248 60631167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1819 1 481 NAC Transcription Factor Family AT3G57150 78.794 0.0 749