LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g1800	ATGGGTGCTTGCTGGAGCAATCGGATTAAGGCCGTAAGTCCTTCAAATACAGGGTTTACTTCCAGAAGTGTAAGCAGGGATGGCTGTAACATCAGCTCAAATAGCAAAAGCTCATCAGCCTCCATACCCTTGACTCCTCGGAGTGAGGGTGAGATATTGCAATCTTCCAATATGAAAAGCTTCAGCTACAATGAACTTAGGGCAGCCACAAGAAATTTTCGCCCAGACAGTGTCTTGGGAGAGGGTGGATTTGGTTCAGTTTTTAAGGGCTGGATGGATGAGCATTCACTTGCTGCTACCAAGCCGGGAATCGGCATGGTTATTGCCGTGAAAAGGCTCAACCATGATGGGCTCCAGGGTCACAAGGAATGGTTGGCTGAAATCAACTTCCTTGGGCAACTGCAACATCCTAATCTTGTCAAATTGATAGGTTACTGTTTAGAGGATGAGCATCGGCTTCTAGTTTATGAATTTATGCCCAAGGGCAGTGTGGAGAATCATCTGTTCAGAAGAGGTTCTCATTTTCAGCCACTCTCTTGGACCTTGCGATTGAAGATATCCCTGGGGGCTGCAAGGGGCCTTGCATTTCTCCACAGTGCAGAAGTTAGAGTCATATACCGTGACTTTAAGACTGCTAATATCCTGCTTGACACAAACTATAATGCCAAACTTTCTGATTTTGGGTTGGCCAGAGATGGGCCTACTGGTGATAAGAGCCATGTCTCTACTAGGGTCATGGGAACCCATGGTTATGCGGCTCCAGAGTATCTAGCAACAGGTCATCTCACAGCCAAGAGTGATATATATAGTTTTGGAGTTGTTCTTCTGGAAATGTTATCAGGAAGACGAGCTATAGACAAGAACAGGCCATCTGGAGAACATAACCTAGTTGAATGGGCAAAACCTTATCTATCGAATAAACGCAGAGTTTTTCGTATTATGGATACCCGACTTGAAGGTCAATATTCTCTTATTCGAGCTCAGGGGGTAGCCACCCTTGCTTCTCAGTGTCTTTCTGTAGATCCTAAATACAGACCAAACATGGATGAGGTGGTAAAAACGCTAGAGCAGCTTCAGGAATCAAAAGACACATCAAAAAGTGCTGATCGGAAACGGCACCTTGTACGTGGCCCTGGCCTTAGTCATCCCAATGGCCACCCTGCACCCAGAAAGGTTGCTTATCCCAGGCCTTCTGCTTCTCCCCTTTATGCTTGA	1215	0.4601	MGACWSNRIKAVSPSNTGFTSRSVSRDGCNISSNSKSSSASIPLTPRSEGEILQSSNMKSFSYNELRAATRNFRPDSVLGEGGFGSVFKGWMDEHSLAATKPGIGMVIAVKRLNHDGLQGHKEWLAEINFLGQLQHPNLVKLIGYCLEDEHRLLVYEFMPKGSVENHLFRRGSHFQPLSWTLRLKISLGAARGLAFLHSAEVRVIYRDFKTANILLDTNYNAKLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDIYSFGVVLLEMLSGRRAIDKNRPSGEHNLVEWAKPYLSNKRRVFRIMDTRLEGQYSLIRAQGVATLASQCLSVDPKYRPNMDEVVKTLEQLQESKDTSKSADRKRHLVRGPGLSHPNGHPAPRKVAYPRPSASPLYA	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g1800	404	MobiDBLite	consensus disorder prediction	358	376	-	-
	Glsi07g1800	404	ProSiteProfiles	Protein kinase domain profile.	73	358	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g1800	404	SUPERFAMILY	Protein kinase-like (PK-like)	41	355	IPR011009	-
	Glsi07g1800	404	PANTHER	OS01G0588500 PROTEIN-RELATED	38	359	-	-
	Glsi07g1800	404	Gene3D	Transferase(Phosphotransferase) domain 1	159	377	-	-
	Glsi07g1800	404	Gene3D	Phosphorylase Kinase; domain 1	48	158	-	-
	Glsi07g1800	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	204	216	IPR008271	GO:0004672\|GO:0006468
	Glsi07g1800	404	FunFam	Serine/threonine-protein kinase BIK1	40	158	-	-
	Glsi07g1800	404	MobiDBLite	consensus disorder prediction	14	49	-	-
	Glsi07g1800	404	MobiDBLite	consensus disorder prediction	358	404	-	-
	Glsi07g1800	404	Pfam	Protein kinase domain	76	353	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi07g1800	404	FunFam	Probable serine/threonine-protein kinase PBL8	159	374	-	-
	Glsi07g1800	404	CDD	STKc_IRAK	79	358	-	-
	Glsi07g1800	404	ProSitePatterns	Protein kinases ATP-binding region signature.	79	111	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g1800	Glsi-ChrGlsi07	59783188	59785744	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g1800	51	368	Glycoside Hydrolase	AT3G07070	49.216	5.94e-104	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Glsi07g1800		Pkinase	1.8e-46	CL0016