Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1798 ATGCGAAGGAGGGGAAGTGAGCTTCCAAATAGTTTGAGAGCAAGTGTAAGCATTTCTACTTCAACTTCTCTGCTTTTAAGCATCTGGTTTCTTACATGTGCCCTTGCTAATCTAAAGCTGGAATTTAACATTGGGTCTGGACAAATAAAGCACTGTTCAAATGATTTAACACTGACACCAAGACTAGATATTATGTTTACATTATTGGTTCTTAGGCTGACAGAATGGGATTGCTTTGAAGTTATTGATTCTTTGAGCGATACTGTTTCTTTTCTTGTTTTCTCTTCCTACATAGTTTGCATGCAGAATTTGTTTCTGTCAGTACAAGTTTCAAGAAATGGGCAGCGGGATTTGCAGTTGGAAATGAAGGAGAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTATTACATGCATATGTCAAACAGTATGGCCCTAGGGAATGGAATCTTGTGTCTAACCGCATGAATATACCCCTAGACAGGGATGCTAAGTCATGCTTAGAAAGGTGGAAAAACTACCTCAAGCCTGGCATTAAGAAGGGATCTCTTACTGAAGAAGAACAGCATCTAGTAATACGCCTTCAAGCAAAACACGGGAACAAATGGAAGAAAATTGCTTCGGAAGTCCCAGGTCGCACAGCTAAGAGGTTAGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGGAGAGAGAAAAAAAGCAAATTTGTAAAACAGTTTATCCAATTTACGACAGAAAATATGATCATCTGCTAGAAACTTTTGCGGAGAAACTTGTGAATGAGCGCCCCTCATCATCATATCTTATGACAGCTTCCAATGTGGCCTTTATGCATACTGATGCACCATCCTCTGCATCAACTTTGCTTCCCCCTTGGCTTTCCAATTCTAATACCAGTAAAGTTGTCAGGCCTCCATCTCCTTCTGTGACACTAGGTCTTTCTCCCTCAACAGTGGTGGCACCTCCATTTCCATGGTTGCAACCTGAGAGAGGACCAAAGAATGCTCCTCTTATCTTGGGAAACGTAACACCTCATGGACCTGTTCCAGCTTTTGGTGATAACATGCTTATATCTGAGTTGTTTGAGTGCGCTAAAGAGTTGGAAGAAGGGCATCAAGCTTGGGCAGCACATAAAAAGGAGGCGGCTTGGAGGTTAAGTAGGGTGGAATTGCAGTTGGAGTCGGAGAAGGCATGCCGAAGGAGGGAAAAGATGGAAGAAATTGAAGGAAAGATCAAAGCTCTCAGGGAAGAGCAGCAAGCTGCTTTGGATAAAATTGAAGGAGAGTATAGGGAGCAGCTAACAGGATTGAGAATAGATGCAGAGACCAAAGACCAGAAGTTAGCTGAACAATGTGCTGCAAAGCACTTGCGTCTTACTAACTTTCTTGGGCAGATAGGATGCAGACCCTGGCTTGCTGAGCCAAATAAAAGATGA 1434 0.4289 MRRRGSELPNSLRASVSISTSTSLLLSIWFLTCALANLKLEFNIGSGQIKHCSNDLTLTPRLDIMFTLLVLRLTEWDCFEVIDSLSDTVSFLVFSSYIVCMQNLFLSVQVSRNGQRDLQLEMKERQRWRAEEDALLHAYVKQYGPREWNLVSNRMNIPLDRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIRLQAKHGNKWKKIASEVPGRTAKRLGKWWEVFKEKQEREKKQICKTVYPIYDRKYDHLLETFAEKLVNERPSSSYLMTASNVAFMHTDAPSSASTLLPPWLSNSNTSKVVRPPSPSVTLGLSPSTVVAPPFPWLQPERGPKNAPLILGNVTPHGPVPAFGDNMLISELFECAKELEEGHQAWAAHKKEAAWRLSRVELQLESEKACRRREKMEEIEGKIKALREEQQAALDKIEGEYREQLTGLRIDAETKDQKLAEQCAAKHLRLTNFLGQIGCRPWLAEPNKR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1798 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 229 IPR017930 -
Glsi07g1798 477 ProSiteProfiles Myb-like domain profile. 175 225 IPR001005 -
Glsi07g1798 477 FunFam MYB-related transcription factor 125 179 - -
Glsi07g1798 477 Gene3D - 183 239 - -
Glsi07g1798 477 ProSiteProfiles Myb-like domain profile. 120 174 IPR001005 -
Glsi07g1798 477 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 122 473 - -
Glsi07g1798 477 SUPERFAMILY Homeodomain-like 125 219 IPR009057 -
Glsi07g1798 477 CDD SANT 184 225 IPR001005 -
Glsi07g1798 477 Pfam Myb-like DNA-binding domain 128 189 - -
Glsi07g1798 477 Coils Coil 404 431 - -
Glsi07g1798 477 Gene3D - 125 179 - -
Glsi07g1798 477 CDD SANT 127 174 IPR001005 -
Glsi07g1798 477 SMART sant 179 227 IPR001005 -
Glsi07g1798 477 SMART sant 124 176 IPR001005 -
Glsi07g1798 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 174 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1798 Glsi-ChrGlsi07 59762289 59765351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1798 122 468 MYB Transcription Factor Family AT2G37630 64.754 6.79e-152 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g1798 Myb_DNA-bind_6 8.3e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g1798 07 59762289 59765351 Glsi06g1755 06 64468382 64471915 CCT