Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1793 ATGAACTCCACTTTGATTCCCGCCACTTCTCTGCTAGCAGAGAATGATATGGCTGAGGTGAAATCAGAGGAGTGTTATCTGGAGATTAAGCAATCTACAGCTGCTTCTAGCTCCTCTATATCTGAAGGCAGTGGCAGTGCGGTGCACAAGTCCCCTGGAATATGTAGCCAAGCAGCAACATCACCCTCTCATCGGAGGACCACTGGCCCTATAAGGCGTGCCAAGGGTGGTTGGACAGCAAAGGAGGATGAGACATTAAGGAATGCTGTTGCAGCTTTTAAGGGAAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATAGATCAGAAGTTCAATGTCTGCACAGATGGCAAAAAGTTCTCAATCCAGAACTTATTAAAGGACCTTGGGCTCAAGAGGAGGATGATAAAATTGTTGAACTGGTGTTAAAATATGGGCCTGCAAAATGGTCCTTGATAGCCAAGTCTTTGCCTGGTCGTATAGGGAAACAGTGCCGAGAGCGGTGGCACAATCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGGAGGAGGAAGAAGCCCTCATGAAAGCTCATTGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTGCCTGGGAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCTCTGAAGAAAAAGTTGGATTTTTATTTAGCTACTGGAAAACTTCCACCAATTTTGAAGAACAGTCCACAAGTTAGTGTCAAAGATACAATTATATGCTCTGCACCTAAAACAATACTTGTTTGTTCAAATAAAGGATTAGATACAGCTACTGAGACATCATCAGAAACTACAGACATTGGTAAGCTAGATGACAGTGGTAAGACTCAGTTAGAATACTCAGCAACAGTGCAGGAGGTTCCTGATTCTTCAAATGTTTCTGCAAATGAGTCTGCTGATTCTGACTGTGTAAAATGCAAGCCTGAACCATATAATTTAGATCCCAGCTGTAGCAACTCAGAACCAGAGTCAAGAGACAAATTTGGAATAAACAGTGAGCCAACATTTGAGATATCTAAACTCAGTGGCAAGCCAACCATTGAGCATTGTATAAATAATGTTGAAATGAGCAGAAGGTTAACCACATCTTTTTCACAGGAAAGTCCAAACAGTGGTTCTTTATGTTATGTGCCGCAGCAGATAGAGAGTTCAGATCATTTAGATTCTCTTTATTTAAATATTTTTAGCCTGCAGAATGAACACAGCTCTACCCCAATAGTATCGCCTATTGGCTTCTTCACTCCGCCTTGTGTGAAGGGTAGTGAATTATGCACTCAGACTCCTGAATCAATATTGAAAATGGCTGCTAAAACTTACCCAAATACTCCGTCCATATTGAGAAAGAGAAGGACTGGTGTCCAGACACATGTCACTCCCACTAAAGTTGTGAAGGTAGATGGTGAATCTCATACTTCTAAAGAAGAACAGAGAAACGAGAATAGTTCTGGTTCTAATGTCAGCAGGTTCTCTGAGAGTCCCACAAGTAATGGAAATGTTAATGGCATTCCCAATATTAGGGCTTTCAATGCATCTCCTCCCTACCGGTTAAGATCCAAGAGAGCAGTGGTTGTCAAATCTGTGGAGAAACAGCTTGAGTTTGCATTTGACCAAGTGAAGCATGGTGGAAATATCAGAAGAATGGAAAAATCTGCAAAGAGGAGCACTGTAATGGCCGAAGATTGTCTGCGTAATACAAAATTGGGAGTGACATAG 1758 0.417 MNSTLIPATSLLAENDMAEVKSEECYLEIKQSTAASSSSISEGSGSAVHKSPGICSQAATSPSHRRTTGPIRRAKGGWTAKEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELIKGPWAQEEDDKIVELVLKYGPAKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEEEALMKAHCIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLATGKLPPILKNSPQVSVKDTIICSAPKTILVCSNKGLDTATETSSETTDIGKLDDSGKTQLEYSATVQEVPDSSNVSANESADSDCVKCKPEPYNLDPSCSNSEPESRDKFGINSEPTFEISKLSGKPTIEHCINNVEMSRRLTTSFSQESPNSGSLCYVPQQIESSDHLDSLYLNIFSLQNEHSSTPIVSPIGFFTPPCVKGSELCTQTPESILKMAAKTYPNTPSILRKRRTGVQTHVTPTKVVKVDGESHTSKEEQRNENSSGSNVSRFSESPTSNGNVNGIPNIRAFNASPPYRLRSKRAVVVKSVEKQLEFAFDQVKHGGNIRRMEKSAKRSTVMAEDCLRNTKLGVT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1793 585 ProSiteProfiles Myb-like domain profile. 174 224 IPR001005 -
Glsi07g1793 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 228 IPR017930 -
Glsi07g1793 585 Pfam Myb-like DNA-binding domain 75 121 IPR001005 -
Glsi07g1793 585 Gene3D - 180 238 - -
Glsi07g1793 585 ProSiteProfiles Myb-like domain profile. 70 121 IPR001005 -
Glsi07g1793 585 ProSiteProfiles Myb-like domain profile. 122 173 IPR001005 -
Glsi07g1793 585 MobiDBLite consensus disorder prediction 37 77 - -
Glsi07g1793 585 Gene3D - 74 126 - -
Glsi07g1793 585 FunFam Transcriptional activator Myb isoform A 74 126 - -
Glsi07g1793 585 CDD SANT 129 173 IPR001005 -
Glsi07g1793 585 MobiDBLite consensus disorder prediction 37 67 - -
Glsi07g1793 585 SMART sant 178 226 IPR001005 -
Glsi07g1793 585 SMART sant 74 123 IPR001005 -
Glsi07g1793 585 SMART sant 126 175 IPR001005 -
Glsi07g1793 585 CDD SANT 78 121 IPR001005 -
Glsi07g1793 585 MobiDBLite consensus disorder prediction 493 520 - -
Glsi07g1793 585 SUPERFAMILY Homeodomain-like 124 220 IPR009057 -
Glsi07g1793 585 SUPERFAMILY Homeodomain-like 74 131 IPR009057 -
Glsi07g1793 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 121 IPR017930 -
Glsi07g1793 585 Gene3D - 127 178 - -
Glsi07g1793 585 Pfam Myb-like DNA-binding domain 130 190 - -
Glsi07g1793 585 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 177 IPR017930 -
Glsi07g1793 585 FunFam Transcription factor MYB3R-2 180 246 - -
Glsi07g1793 585 CDD SANT 181 224 IPR001005 -
Glsi07g1793 585 MobiDBLite consensus disorder prediction 466 524 - -
Glsi07g1793 585 FunFam Transcriptional activator Myb isoform A 127 179 - -
Glsi07g1793 585 PANTHER MYB PROTEIN-RELATED 75 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1793 Glsi-ChrGlsi07 59692486 59697447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1793 14 548 MYB Transcription Factor Family AT3G09370 48.435 2.73e-149 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi07g1793 Myb_DNA-bind_6 9.3e-17 CL0123