LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g1773	ATGCTTCCAGCAAGCAAGGGACTTTCCTCAATTATACATCTTGATCTTGACACTTTGCAAAACCTTGATACATTCTGGGTTTCATTGAGTGTTTTTCCTCCTAAAAGTGTGAAGCTGAAAAGACCATTTGCTATTAAACCCTGGATGAACTCAGAGGAGAATGTTGGCAATGTTCTCATGCTTGATTTGAGGCTTCTAAGCTTGCGGTTTGAAAGCTCTGGTGGTGTATTTCAGGTTTGGAGATTTTTGATTACTTTTGCAGATGTGCTTGGGTTATGGCCTTTTACCCTTGATGAATTTCTGCAGGCATTTCATGACTATAGCCCAATGCTTGACATTAATATTAATAATAATGAAGCTTCACCCAGCACTGCTGAAAACCAAAAAGTAGTTCTTGGGGCACAGAGCACGCCTCTTGAAAAGCCCTCAGTTGTTCAAGATCTCTTTGCAGGTCCAGATAACCTTCAGACTCTATCTGCCCATACTTCGAAAAGGTCTCGTTCACAGTTGAAGTCTTATATTGCACATATAGCAGAAGAGATGTATGTATACAGGTCCTTGCCCCTTGGTCAAGATCGGAGACGTAATCGATATTGGCAATTTGTTGCATCTACTTCTAGCAATGATCCAGGTTCTGGCAGGATCTTTGTCGAATTACATGATGGCAATTGGAAGCTTATTGATTATGAAGAGGCCTTTGATGCACTGTTGACATCACTTGATACTCGTGGGATCAGGGAATCTCATTTGCGCTTAATGTTGCAAAATATTGAGAATTCCTTTAGAGAAAATGTTCGAAAGAATGTCCAATGTGCTAAAATTGCAAGCAGAGGGGAAATTTCAATTAAAAATGAAGCTGATGCAATAGATTCCAACCCTGATCACGATGCTGGATCTGACAGTCCTAGCAGTACTCTTCATGATTTGACTTCTGATAATACATTGGAAACTTCATCATCCTTTAAAATTGAGCTTGGGAAAAGTGAGAGTGAAAGGAAAGCTGCCTTGAGAATGTTTCAAGATTTTCAAAAGTGGATATGGAAAGAAAGCTATAATTCATCAACATTATGTGCAATGAAATATGGGAAAAAGAGATGCAAACCATTGGTGGACATCTGCGATATGTGTTTGAACCCTTATTTCTTTGAAGACTCCCATTGCAATTCTTGCCACCGTACATTTCCTGCTGATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGAGAAGTTAGACTCCAAAGTTAATTGTGTTTTGGATTCTTCTCTTCCATTGCGAACAAGATTGCTGAAGGCCCTGTTGGCTTATATTGAGGTGTGTGTTCCTCTTGAAGCATTTCGATCAATTTGGACTGAAGAGATTAGGAAGCAGTTGGGGGTGAAGTTGAGCAAATCATCTTCGATTGATGAACTTTTGAAGGCAATGTTTGATCCAAAGGTTGAAGCTCGCGTGGCTGGTGCAATATTTACTTCACCTGCAGCTGATACAGTGACCGATCCTAATGCTTCTCAAAAACTGTATGAAGGGGCCTCCTCATCTGACAAAAATATCAAATTATATGAAGGGTTGTTACATGACCTCCTTTTTGAACCGGAACGAGATGCTATCATCCAGGACATAATTCAGTGGATGAATAGTAGGATATGA	1653	0.3962	MLPASKGLSSIIHLDLDTLQNLDTFWVSLSVFPPKSVKLKRPFAIKPWMNSEENVGNVLMLDLRLLSLRFESSGGVFQVWRFLITFADVLGLWPFTLDEFLQAFHDYSPMLDININNNEASPSTAENQKVVLGAQSTPLEKPSVVQDLFAGPDNLQTLSAHTSKRSRSQLKSYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASTSSNDPGSGRIFVELHDGNWKLIDYEEAFDALLTSLDTRGIRESHLRLMLQNIENSFRENVRKNVQCAKIASRGEISIKNEADAIDSNPDHDAGSDSPSSTLHDLTSDNTLETSSSFKIELGKSESERKAALRMFQDFQKWIWKESYNSSTLCAMKYGKKRCKPLVDICDMCLNPYFFEDSHCNSCHRTFPADNGFNFSKHAFQCGEKLDSKVNCVLDSSLPLRTRLLKALLAYIEVCVPLEAFRSIWTEEIRKQLGVKLSKSSSIDELLKAMFDPKVEARVAGAIFTSPAADTVTDPNASQKLYEGASSSDKNIKLYEGLLHDLLFEPERDAIIQDIIQWMNSRI	550

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g1773	550	PANTHER	HOMEOBOX-DDT DOMAIN PROTEIN RLT2	115	477	IPR044977	GO:0006357
	Glsi07g1773	550	MobiDBLite	consensus disorder prediction	296	312	-	-
	Glsi07g1773	550	Gene3D	alpha/beta hydrolase	479	550	IPR029058	-
	Glsi07g1773	550	ProSiteProfiles	DDT domain profile.	70	130	IPR018501	-
	Glsi07g1773	550	Pfam	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	185	257	IPR028941	-
	Glsi07g1773	550	MobiDBLite	consensus disorder prediction	285	312	-	-
	Glsi07g1773	550	Pfam	DDT domain	74	111	IPR018501	-
	Glsi07g1773	550	SMART	testlast3	70	120	IPR018501	-
	Glsi07g1773	550	Pfam	Serine aminopeptidase, S33	495	534	IPR022742	-

Showing 1 to 9 of 9 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g1773	Glsi-ChrGlsi07	59200901	59204717	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g1773	161	477	Homeobox Transcription Factor Family	AT1G28420	48.265	5.96e-81	275

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Glsi07g1773		WSD	1.5e-14	No_clan

Showing 1 to 1 of 1 entries