Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1763 ATGAGTCTCCTCAAAAGAACTTTGCCAGAAGACTTTCACATTTTCCTTTCTAACCTGCGACTCTATTTTCCATCTTTTCGAACAACTCCTTTACCATGCTATGCTCTCTTGAATTTCCATCAATGTAACGGCGTTAGGCCAGCAGAGACTTCAGTTCAGTCCACCGCGTCTTCTCTCTTCGCCTGTGCTATAAAAGCACCGTTCCCTTTCATTTCTCTTTGGCTCCATTTCCTTTCCTTGTTCATTCTTCATCATTCAGACACACAGAAAAACACAGAGAGAGAGAGTGTGTGTGTCTGTGTGTTTGAAACAGAGACATACAGAGGGAGAGAAATAGTAGAAGCAACTATGGAGGCTTCTGTGAAATGGTTCAGCATTTTCGTTCTGACTATGGCACTTCTTTTATCCAGCGCCAAGGCATTGAATGAGAACGAGAATGAGAAAGACCGTCTTGTGCAGTTAAGGAATGTGGAAACAGGGGAGTTGCAGAGCTTGAAGAATTTATCAATGGCGGACAGGTCAGATGAACCTATGAATGAGCATGCAGTTGATAATCCAGAGGAGATAGCTTCCATGGTTGAAAAGAACATACGAAATTATACGGAAAGAAGGAACTTGGGTTTCTTCTCATGTGTGACTGGGAATTCAATTGATGACTGCTGGCGCTGTGACAACCGCTGGCACCAACGGCGAAAGCGCTTGGCCGATTGTGGAATTGGCTTTGGACGCAATGCCATTGGTGGCCGTGATGGAAGGTACTATGTTGTGACTGACCCAAGCGACCACGACCCTGTTAACCCCAGACCAGGCACTCTACGCCACGCTGTTATTCAAGACAGGCCCTTATGGATTGTATTCAAGAGGGACATGGTGATAACCTTAAAGCAAGAGCTTATTATGAATAGCTTCAAGACCATTGATGGTCGTGGTGTCGATGTGCACATTGCTTATGGGGCTTGCATTACTATCCAATTCATCACCAATGTCATCATCCATGGCCTACATATCCACGACTGCAAGCCGACTGGTAACGCAATGGTTCGTAGCTCGCCAACACATTATGGATGGAGGACTATAGCTGATGGGGATGGAATTTCCATATTTGGTTCAAGCCACATTTGGATTGACCATAACTCCCTGTCTAATTGCGCAGATGGCCTTATTGATGCTATTATGGGCTCCACTGCCATTACCATTTCCAACAATTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGATTCATATGTGAGAGATAAGGAGATGCAAGTGACCATCGCCTACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCAAGGTGCAGACATGGGTATTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCCAATCCCACAATTAACAGCCAAGGGAACCGCTACCTTGCCCCTCAAAACCCTTTTGCCAAGGAGGTGACAAAGAGGGTGGATACAGCAACAGGCGTATGGAACCATTGGAATTGGAGGTCAGTGGGAGACCTGATGCTGAATGGAGCCTTTTTCACTTCATCAGGAGCTCGTACTGTAGAAAGCTATGCCAGAGCCTCCAGTTTAGGGGCCAAATCGTCCTCTATGGTTGGTGCCCTTACTTTTGGTGCTGGTGTTCTTAACTGCCGCAGGGGCTACACCTGTTAA 1692 0.461 MSLLKRTLPEDFHIFLSNLRLYFPSFRTTPLPCYALLNFHQCNGVRPAETSVQSTASSLFACAIKAPFPFISLWLHFLSLFILHHSDTQKNTERESVCVCVFETETYRGREIVEATMEASVKWFSIFVLTMALLLSSAKALNENENEKDRLVQLRNVETGELQSLKNLSMADRSDEPMNEHAVDNPEEIASMVEKNIRNYTERRNLGFFSCVTGNSIDDCWRCDNRWHQRRKRLADCGIGFGRNAIGGRDGRYYVVTDPSDHDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVDVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTIADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKEMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNPFAKEVTKRVDTATGVWNHWNWRSVGDLMLNGAFFTSSGARTVESYARASSLGAKSSSMVGALTFGAGVLNCRRGYTC 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1763 563 Coils Coil 137 157 - -
Glsi07g1763 563 PANTHER PECTATE LYASE 18-RELATED 180 560 IPR045032 GO:0030570
Glsi07g1763 563 FunFam Pectate lyase 214 556 - -
Glsi07g1763 563 Pfam Pectate lyase 299 478 IPR002022 -
Glsi07g1763 563 Gene3D - 214 556 IPR012334 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 297 313 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 361 382 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 441 460 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 534 557 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 237 254 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 261 286 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 463 482 IPR018082 -
Glsi07g1763 563 PRINTS Pollen allergen Amb family signature 505 529 IPR018082 -
Glsi07g1763 563 SUPERFAMILY Pectin lyase-like 193 557 IPR011050 -
Glsi07g1763 563 SMART amb_all 289 486 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1763 Glsi-ChrGlsi07 58952170 58958420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1763 155 563 Polysaccharide Lyase AT4G13710 75.779 0.0 662