Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1724 ATGTCCAGAACCTCTCCTTCCGCTCCCCAATTCTCTATTATAACCCTTTTCTCTGTTCCCGGCTTGGGAAATAATATGAACTTGCAGGGAATGGAGAACGCATACGAAGATAAAAATCTTGTCGATAATGAACAGGACGATTTCTCCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTACTCACTTGCGGTCACATATCCTGTTTCTGGTGTGTCCATCACTCGATGAACTATCTGCGCGAGTCTCATTGTCCAATTTGTAGGCATCCATATTATCACTTTCCAACAATCTGTCAGATGCTTCACTTTTTGCTCCTGAAGATGTATCCTGTTGCTTACAACAGAAGGGAAAATCAAACTCTTGAGGAAGAGAAGGAACGGGGCTATTACTCCCCTCAATTTGAGTCTGAGACACATGTATCAGAAGCTAAGATTAATCATTCAGGCAGTTCATCTTCCTGCTCTGTTATAAATCTGGCATCCAACCCATTGAGTGCAGGAGCTTCCGTGAGTATGGAGAAATCAGGGTCTGCAAACCCTAAGCAAGATGAAGGCACTATCTGTATTAAACATATTTCTGATGGGATACCTGGAGTTGTTGAGACTCTTTCTGTTCAAGGAAATAATTTGCCTCAGAATGAGCACCGTGGACGACAGAAGATATCAGTTGCAGATGTTATGTGTCCAGCATGCAAGCAACTGCTCTTCCATCCTGTTGTTCTTAATTGTGGTCATGTATACTGTGAATCTTGTATCATGAACTCAGCTGATGAGATGCTTAGATGCCAAATTTGTCAAAGTCCACATCCAAGAGGATTTCCAAAAGTTTGTTTGGAGCTTGATCACTTTTTGGAGGAACATTTTCCTGAAGAATATGCACAACAAAGAGATGCTGTGACTCCTTCTTCTTGTTCATTGGTTAATGGGAAAGGAGAAAAGATAGCATGGTGGTCTGGTCCTCACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTATCCAATAGTTGGGGATAGATACAGATGCAAAGACTGTAAGGAGGAGATTGGTTTTGATCTTTGCGGTGATTGTTATAAGACTAGTCCCAAGCTTCCCGGTCGGTTCAATCAGCAGCACACCTCGGAACACAAGTTTGAGCAAATTAATATGGTTACTAACATAATGAGGCTGGTTAGTGGACAGGTAGGGGACAGCTTAATTGAAAGTTTAGTTCTGACTGATGATGAAGATACCCAGAACGACTCTGAAGGAACCAATTAA 1287 0.418 MSRTSPSAPQFSIITLFSVPGLGNNMNLQGMENAYEDKNLVDNEQDDFSESFVCCVCLDLLYKPIVLTCGHISCFWCVHHSMNYLRESHCPICRHPYYHFPTICQMLHFLLLKMYPVAYNRRENQTLEEEKERGYYSPQFESETHVSEAKINHSGSSSSCSVINLASNPLSAGASVSMEKSGSANPKQDEGTICIKHISDGIPGVVETLSVQGNNLPQNEHRGRQKISVADVMCPACKQLLFHPVVLNCGHVYCESCIMNSADEMLRCQICQSPHPRGFPKVCLELDHFLEEHFPEEYAQQRDAVTPSSCSLVNGKGEKIAWWSGPHSKVHIGVGCDFCGMYPIVGDRYRCKDCKEEIGFDLCGDCYKTSPKLPGRFNQQHTSEHKFEQINMVTNIMRLVSGQVGDSLIESLVLTDDEDTQNDSEGTN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1724 428 Pfam Zinc finger, ZZ type 332 369 IPR000433 GO:0008270
Glsi07g1724 428 Gene3D - 328 392 IPR043145 -
Glsi07g1724 428 ProSiteProfiles Zinc finger RING-type profile. 234 272 IPR001841 -
Glsi07g1724 428 ProSitePatterns Zinc finger RING-type signature. 249 258 IPR017907 -
Glsi07g1724 428 SMART ring_2 54 93 IPR001841 -
Glsi07g1724 428 SMART ring_2 234 271 IPR001841 -
Glsi07g1724 428 FunFam E3 ubiquitin-protein ligase PRT1 45 140 - -
Glsi07g1724 428 SUPERFAMILY RING/U-box 231 294 - -
Glsi07g1724 428 SUPERFAMILY RING/U-box 43 104 - -
Glsi07g1724 428 ProSitePatterns Zinc finger ZZ-type signature. 336 366 IPR000433 GO:0008270
Glsi07g1724 428 ProSiteProfiles Zinc finger ZZ-type profile. 331 395 IPR000433 GO:0008270
Glsi07g1724 428 FunFam E3 ubiquitin-protein ligase PRT1 221 314 - -
Glsi07g1724 428 Pfam Zinc finger, C3HC4 type (RING finger) 53 97 - -
Glsi07g1724 428 ProSiteProfiles Zinc finger RING-type profile. 54 94 IPR001841 -
Glsi07g1724 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 327 IPR013083 -
Glsi07g1724 428 Pfam RING-type zinc-finger 234 263 IPR027370 -
Glsi07g1724 428 PANTHER UNCHARACTERIZED 44 393 - -
Glsi07g1724 428 FunFam E3 ubiquitin-protein ligase PRT1 325 390 - -
Glsi07g1724 428 SUPERFAMILY RING/U-box 322 390 - -
Glsi07g1724 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 150 IPR013083 -
Glsi07g1724 428 SMART zz_5 330 379 IPR000433 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1724 39 94 C3H Transcription Factor Family AT1G74990 43.860 6.32e-11 58.5