Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1695 ATGTCAGCAGCCGATAAGCGAGACTCGCTAGCTGGTTTGACCCTCGACGACGTGTTAACAAACCAAAAGAGAGCAGTCGTGCCGAGCAATCAGCTCAGTGACAGACGACGAACCCTTCTAGACATCATCCGAGAAGACGAGTCTAACAAAAAAGATCGCAAGTCTTGGAAAGCTTTCAAGGACAAGCTTCGGCTCAAGCGCGCCGGATCTGCTTGGACCTCCTCCATCCTCATTCCTGCTTCCGATCTCGCTATCTTGGACCAGAATAAAAACCACAGATCCTTATCCCAGACCCAGTTCCCGCGTCGAAGCTCGGTCCGAGTCCTCACATTCTCCAACTCGGACGTGACAACTCAGTACATGGCTACCCAACCGGACGAAAATCACGTCATTGGATCTGATGACCCAGCTCCAAATGCTGGCCCCGCATTTACTCGTCAGAGCTCCACCCGTTTGGCCGGCAATTCCTCCGAGAACCCTCCCATCATCAAACCCCAAATTTCCCGCCACAACTCCACGCGCCTCGCGTCGCGTGCTGACTCCATCCGGCGAGAACGCGTGGTGACTTTTAGGGACACTAATGACAGTGACGACGATGACGACGAAGGATCAGACGACGAGCACCCGTCACGTCGCCATCCGATGACTATGGGGGAGGAGAGACAGTTATCTGCCAGAGAAGCTGTGGCTGCCCAGGAGGCAGCAGAGGCAGCGGCGGCAGCAGCAGCTGAGGAGGAGGAAGAGGAGTCATCGGGGGCAGCGGCCGAGCCGGTGACGATGTCGCTGATGGACTTGTTGGAGGAGACTGATAGGCAAATGGGGTTGGAGGGGTCAAGGTACAGAATGGCAGATGATGACGATGAAGATGAGGAAGAGGAAGATGAAGATGAAGGGGAAGAGGAGCATAGTTGCTGCGTGTGCATGGTGATGCATAAAGGTTCAGCGTTCGTACCGTGTGGGCACGCGTTTTGCAGGCTGTGTTCCAGGGAGCTTACTGTGAGCAGGGGAAATTGCCCACTCTGCAACAGTTTTCTCCTGGAAATTCTTGACGTTTTCTGA 1059 0.5467 MSAADKRDSLAGLTLDDVLTNQKRAVVPSNQLSDRRRTLLDIIREDESNKKDRKSWKAFKDKLRLKRAGSAWTSSILIPASDLAILDQNKNHRSLSQTQFPRRSSVRVLTFSNSDVTTQYMATQPDENHVIGSDDPAPNAGPAFTRQSSTRLAGNSSENPPIIKPQISRHNSTRLASRADSIRRERVVTFRDTNDSDDDDDEGSDDEHPSRRHPMTMGEERQLSAREAVAAQEAAEAAAAAAAEEEEEESSGAAAEPVTMSLMDLLEETDRQMGLEGSRYRMADDDDEDEEEEDEDEGEEEHSCCVCMVMHKGSAFVPCGHAFCRLCSRELTVSRGNCPLCNSFLLEILDVF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1695 352 PANTHER OS01G0917900 PROTEIN 6 352 - -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 283 300 - -
Glsi07g1695 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 352 IPR013083 -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 272 300 - -
Glsi07g1695 352 Coils Coil 228 248 - -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 176 193 - -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 205 220 - -
Glsi07g1695 352 ProSiteProfiles Zinc finger RING-type profile. 304 342 IPR001841 -
Glsi07g1695 352 SMART ring_2 304 341 IPR001841 -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 142 175 - -
Glsi07g1695 352 SUPERFAMILY RING/U-box 303 348 - -
Glsi07g1695 352 MobiDBLite consensus disorder prediction 128 258 - -
Glsi07g1695 352 Pfam Zinc finger, C3HC4 type (RING finger) 301 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1695 Glsi-ChrGlsi07 56084475 56085533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1695 1 352 C3H Transcription Factor Family AT3G07120 42.336 4.75e-61 198