Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1684 ATGTTGAAGGAAAGACAGCGAGAAAGAAAGAGGGTTAGAACAACCCAGAATTGGGTGGGGGCTTTCTCACTTTCTCTTGTGTTGTCAATTTCTCTTATTTTATACATAGAAATGGCTGTTCCAAAAGTGAACAAAATGTTGCTTGAGGAACTTGAAGAAATGGGATTTCCACAGGCAAGAGCAACGCGGGCACTTCATTTTACTGGTAATACTAGCTTAGAGGATGCTATAAATTGGATAGTTGATCATGAGAATGACGCTGATATTGATGAGATGCCATTGGTACGATTTTGTACCCCTGTTTTTCTTGATTTCCTATACTGTCCATCAGAATGGCATATTGGAATATCTGAGGAGATAGGCATATGGCCAGTCTGTGTTGTCTGGGAATGGGAAAGAACAAGTTATGGCTCTCAAGAAGCTGAGAACTCTGTACCTTTGGTGGATGCAGATATTGAGATCGATTCTTCTCAATCATTCCCTATCACAGAAGAAATGAAAATCGAAGCACGGAAGTTAAGGTCAAGAATGAAATTGGTAATGACAGGAGTTAATAAGGATTGGCCTTTAGACAATTTGGTCGAGAGGATTCAAGCAGGTAAGAAACTCAATGAGATGAAGCGGATTGCTGAAGAAAATGAAAGACAACGGTATTTAGTCTCGTGGAAAGCGGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTTCTAGAAAAACTAGAACAGGATAAGATACATACTAGTGCAACATATGTCAGTGGAAGAAAAACAAAGGAGAAATGTTGTATGCCAATATGGTGTCTTTTGTACAATGCCTATTTGGTATTTGAAGTACAAATTGGAAAAAGTAAAGAAAACTATAGGAAAGGTAGCTATGACAAGGTTGATATTTGGTGCTCTGATTCTAATGATCCTGGGAACCAGCTACCATATATGGACACTATACGTCAGCCATCCCTATTCACTGAAGCAAGCAGAACATATAATGATAAGTTTACTTTGTTGTTGTGCACACAAGGAAGTGAGGGAGCAAAAAATAGTATTTCAAGTGGGGAGTTAAACAGAAGGTCGAAGCTTGGATTGCCTCCAGAAGACCTTCTAGCTGTGAAATCTCCAACTACTACAGTACAGACAAAAAAGGAGTCAAATTCAAAGCCTGTTTACCCAGTTACAAAAGTTGAGCTCTTGAGAGAATGTTTGAGATCTCTCAAGCGTAACCACCAGGGTGAGCATGCCAGAGTCAGAAGGGCCTTTGAAACACTACTAATTTATGTTGGAAATGTTGCCAAGAATCCTGACGAGGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCTGGATAGAGTCGGTAGTTTAAATGGAGGTGTGGAGTTTCTTGAGCAATGTGGGTTTGAGAGAATGGATGATTTCTTATACCTTCGTCGTGAAAAGGTTGACATTACAGTAATAAATTCAGCTGTTTCTGTGTTAATGTCTGCAATGACAAATCCCTTCTTCGGAGTTTTAAGTACATAG 1521 0.3938 MLKERQRERKRVRTTQNWVGAFSLSLVLSISLILYIEMAVPKVNKMLLEELEEMGFPQARATRALHFTGNTSLEDAINWIVDHENDADIDEMPLVRFCTPVFLDFLYCPSEWHIGISEEIGIWPVCVVWEWERTSYGSQEAENSVPLVDADIEIDSSQSFPITEEMKIEARKLRSRMKLVMTGVNKDWPLDNLVERIQAGKKLNEMKRIAEENERQRYLVSWKAEKEEEKRAREKVLEKLEQDKIHTSATYVSGRKTKEKCCMPIWCLLYNAYLVFEVQIGKSKENYRKGSYDKVDIWCSDSNDPGNQLPYMDTIRQPSLFTEASRTYNDKFTLLLCTQGSEGAKNSISSGELNRRSKLGLPPEDLLAVKSPTTTVQTKKESNSKPVYPVTKVELLRECLRSLKRNHQGEHARVRRAFETLLIYVGNVAKNPDEEKYRKIRLSNPLFLDRVGSLNGGVEFLEQCGFERMDDFLYLRREKVDITVINSAVSVLMSAMTNPFFGVLST 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1684 506 CDD UBA_PUB_plant 43 90 - -
Glsi07g1684 506 Gene3D - 45 90 - -
Glsi07g1684 506 SMART uba_6 44 82 IPR015940 -
Glsi07g1684 506 PANTHER F13M7.16 PROTEIN 143 247 - -
Glsi07g1684 506 SUPERFAMILY PUG domain-like 389 500 IPR036339 -
Glsi07g1684 506 Pfam PUB domain 413 481 IPR018997 -
Glsi07g1684 506 Gene3D - 398 494 - -
Glsi07g1684 506 SMART PGNneu 416 476 - -
Glsi07g1684 506 SUPERFAMILY UBA-like 41 94 IPR009060 GO:0005515
Glsi07g1684 506 Coils Coil 219 243 - -
Glsi07g1684 506 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 42 83 IPR015940 -
Glsi07g1684 506 Pfam UBA/TS-N domain 48 80 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1684 Glsi-ChrGlsi07 55692278 55704388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1684 37 95 C2H2 Transcription Factor Family AT1G04850 69.492 1.98e-22 96.3