Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1674 ATGGAGAGATGTTTTCTTGTGCCGTTCATACTCATCCTCACGAGACCATCTCATTCGCGCGCCGGGCTCGAGACCTCATCCCATCGCAGAGATCAGATCCTCCCTCGCCATCGTCTTCGTCTGCCTACCAGTGAATTCTCCAAAATGTTTGGAGTGCGTGGTTCTACTGGAATAGTTTCCGATACTGTTCTCCGGCTTCGTCAAACCTTATCACTTCATGGTGTACGCGTACAATACATAAACATTGGAGGAGGTGTTGGAGGGGAGATCCCTGATAACAAGCGCCTTGAGTATGCTCTGCAGCACGTACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAGTATGTCAAGGACCTAAGTAAAAGAGAGTTACATTCCCTCCGTGAATTACTTTCTAAGTACATGCTTGGAAATGATTTGAAAAAGTGTGTTGAGAAAGATGTGGAAAGGCTGGTGAGTATTCAGTGCTACAGAGGGTTCAGGCATATGGATGGGTTACCTTGTAGAGGACAGCGCACACATACAAATGCCCGCACCAGAAAAAGTAGGCCAGGTTTTGGTGCATCAAGATGA 600 0.4717 MERCFLVPFILILTRPSHSRAGLETSSHRRDQILPRHRLRLPTSEFSKMFGVRGSTGIVSDTVLRLRQTLSLHGVRVQYINIGGGVGGEIPDNKRLEYALQHVHGIGRSKAHHIVCELGVENKYVKDLSKRELHSLRELLSKYMLGNDLKKCVEKDVERLVSIQCYRGFRHMDGLPCRGQRTHTNARTRKSRPGFGASR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1674 199 Gene3D 30s ribosomal protein s13, domain 2 153 193 IPR027437 -
Glsi07g1674 199 Gene3D - 86 151 - -
Glsi07g1674 199 Hamap 30S ribosomal protein S13 [rpsM]. 79 198 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi07g1674 199 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 78 190 - -
Glsi07g1674 199 FunFam 30S ribosomal protein S13 86 151 - -
Glsi07g1674 199 SUPERFAMILY S13-like H2TH domain 87 191 IPR010979 GO:0003676
Glsi07g1674 199 ProSitePatterns Ribosomal protein S13 signature. 167 180 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi07g1674 199 MobiDBLite consensus disorder prediction 179 199 - -
Glsi07g1674 199 Pfam Ribosomal protein S13/S18 87 188 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi07g1674 199 ProSiteProfiles Ribosomal protein S13 family profile. 86 191 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi07g1674 199 FunFam Ribosomal protein S13 152 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1674 Glsi-ChrGlsi07 55433959 55452744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1674 73 191 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.671 7.07e-07 45.4