Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1642 ATGGTTTTTGTAGTGCTACAGATCAAATGTTATATGCAACAGCTACTTCGTGGTATTGAGCATTGCCACAGTCATGGTGTTCTGCACCGAGACTTCAAGGGTTCAAATCTTCTGATTGACAAGAATGGCAATCTAAAGATGGGTGATTTTGGGCTAGCAACTTTGTTTCAGCTGTCTAAGAGGCAGATTTTAACAAGTCGAGTGGTAATCTTGTGGTACCGACTACCTGAACTTCTACTGGGATTTTCAGATTATGGAGTTACTGTAGACCTTTGGCACATGCTACTGCCAGTCAGACACGGAACCACAACTGAGCAGTTGCAACTGAACAATGGGGAAGACAAAATCAAAACGGTAAGTTACTCGGCCACAATTGTTCCTTCATCTCAACAAGATGAGGCAACCATCTCTTCAGGATTCTCGGCCAAAAACAACCTTCTGCCGCCGAAGATGTCCCCAGATCTGAAGCCTCTTCACCGCGGCTGCAATGGTCGAGTTTGCAGCAGCCAAGCAGATCTGGCTATGGCCATGGCTGCGGTCTCTCCACCTTATTATTAA 558 0.457 MVFVVLQIKCYMQQLLRGIEHCHSHGVLHRDFKGSNLLIDKNGNLKMGDFGLATLFQLSKRQILTSRVVILWYRLPELLLGFSDYGVTVDLWHMLLPVRHGTTTEQLQLNNGEDKIKTVSYSATIVPSSQQDEATISSGFSAKNNLLPPKMSPDLKPLHRGCNGRVCSSQADLAMAMAAVSPPYY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1642 185 SUPERFAMILY Protein kinase-like (PK-like) 6 93 IPR011009 -
Glsi07g1642 185 ProSitePatterns Serine/Threonine protein kinases active-site signature. 27 39 IPR008271 GO:0004672|GO:0006468
Glsi07g1642 185 Pfam Protein kinase domain 7 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1642 185 PANTHER CELL DIVISION PROTEIN KINASE 7 94 - -
Glsi07g1642 185 Gene3D Transferase(Phosphotransferase) domain 1 7 94 - -
Glsi07g1642 185 ProSiteProfiles Protein kinase domain profile. 1 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1642 185 SMART serkin_6 3 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1642 Glsi-ChrGlsi07 53771881 53782820 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1642 1 92 Core Cell Cycle Gene Families AT5G64960 58.696 8.23e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi07g1642 Pkinase 1.5e-25 CL0016