Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1636 ATGGGCTGTATATGCTCGAAAGGGACATCATCAAATGAGTACGTTGCTGAGAACCATGTCCACGACAAAGATTTGAAGGCAAATAAAACCTCAAAACATCTGAGTAATTCCCTGAGTGGAGAGAAAGTCGAGATAGAAGCTGATGGTGGTCGTAATGATGCTACTGCACGGTTGTTATCTAATCCGTCTCGGCATGGAATTGCAGGTTCCATTCCCATTTCATTAGATGAGGGGGAGAAGAGTGGGGAAACTACTGGAAAGCCTGCTAAACTACAGGTTCAGATGGGCTCAAACATGGGAATTGGCAGTGGAGGGGAAGGACAACCTAGGGTGACTAGGATTTTTAGTGTAACTAAAGGGGAAAGAGGAGCGCAAGTTCTTGCTGGCTGGCCTTATTGGCTTACTGCAGTTGCAGGGGAAGCCATTAATGGTTGGATACCTCGCAGAGCAGAATCATATGAGAAGTTGGAGAAGATTGGGCAAGGAACTTACAGCAGTGTTTACAGAGCCCGTGATCTTGAAACAAATAAAATTGTTGCATTGAAAAAGGTTCGATTTGCTACTATGGATCCAGAAAGTGTTCGTTTTATGGCAAGAGAAATTATTGTTCTGCGAAGACTTGATCATCAAAATGTCATGAATCTTGAAGGCATCATTACTTCAAGGGCCTCTGGTAGCTTGTATCTTGTTTTTGAATATATGGAACATGATCTTACAGGGCTTGCAGCAATACCTGGCATCAAGTTCACTGAAGCACAGATCAAATGTTATATGCAACAGCTGCTTCGCGGTATTGAGCATTGCCACAGTCATGGTGTTCTGCACCGAGACATCAAGGGTTCAAATCTTCTAATTGACAAGAATGGCAATCTAAAGATTGGGGATTTTGGGCTAGCAACTTTGTTTCAGCCATCCAAGGGGCAGATTTTAACAAGTCGTGTGGTAACCTTGTGGTACCGACCACCTGAACTTCTACTGGGATCTTCAGATTATGGTGTTGCTGTGGACCTGTGGAGCGCTGGTTGCATTCTTGCAGAGTTGTTTGCTGGAAAGCCAATAATGCCTGGACGAACAGAGGTCGAGCAACTTCATAAAATCTTCAAACTATGTGGATCACCTTCTGAAGAGTACTGGAAGAAGTCAAAACTATCACATGCAACAATTTTCAAACCTCAACATCCCTACAAACGTGCTGTTGCTGATACATTTAAGGATTTTCCTTCATCGGCACTAAGCCTTTTGGAGGTCCTTCTTGCTATAGAACCTGAGGATCGAGGAACTGCTTCATTAGCACTGCAGAGCGAGGCCTATGCTCCAAAAAATGGCAACATCCACTATTCAGGACCCTTGCTCCCTCGAGGGGGAAATGTTGAAGAAATGCTTAAGGAGCATGAAAGGCAAATCCAACATGCTGTCCGCAAAGCACGCTTGGATAAGTTCAAGGTGAGATTTTCTCCTCGGAATTGCTCGGTTGCTGAATATTTACTTTGTACAGATGAAACTGATTTTGCTGAAGCAGTTTTCACACTTCAGCGAATGCAAAGGGTGATAGAAAGAAAGCTGGCAAAGCATTTACTATCAAATGCATACTATAATCATAGGAGCTTTGACACCGCAAGCATTTTATGA 1629 0.4346 MGCICSKGTSSNEYVAENHVHDKDLKANKTSKHLSNSLSGEKVEIEADGGRNDATARLLSNPSRHGIAGSIPISLDEGEKSGETTGKPAKLQVQMGSNMGIGSGGEGQPRVTRIFSVTKGERGAQVLAGWPYWLTAVAGEAINGWIPRRAESYEKLEKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREIIVLRRLDHQNVMNLEGIITSRASGSLYLVFEYMEHDLTGLAAIPGIKFTEAQIKCYMQQLLRGIEHCHSHGVLHRDIKGSNLLIDKNGNLKIGDFGLATLFQPSKGQILTSRVVTLWYRPPELLLGSSDYGVAVDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLSHATIFKPQHPYKRAVADTFKDFPSSALSLLEVLLAIEPEDRGTASLALQSEAYAPKNGNIHYSGPLLPRGGNVEEMLKEHERQIQHAVRKARLDKFKVRFSPRNCSVAEYLLCTDETDFAEAVFTLQRMQRVIERKLAKHLLSNAYYNHRSFDTASIL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1636 542 CDD STKc_CDK9_like 153 435 - -
Glsi07g1636 542 MobiDBLite consensus disorder prediction 29 49 - -
Glsi07g1636 542 MobiDBLite consensus disorder prediction 61 86 - -
Glsi07g1636 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Glsi07g1636 542 PANTHER CELL DIVISION PROTEIN KINASE 151 437 - -
Glsi07g1636 542 ProSitePatterns Protein kinases ATP-binding region signature. 159 182 IPR017441 GO:0005524
Glsi07g1636 542 Gene3D Transferase(Phosphotransferase) domain 1 241 474 - -
Glsi07g1636 542 ProSiteProfiles Protein kinase domain profile. 153 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1636 542 Pfam Protein kinase domain 153 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1636 542 SMART serkin_6 153 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1636 542 SUPERFAMILY Protein kinase-like (PK-like) 147 434 IPR011009 -
Glsi07g1636 542 Gene3D Phosphorylase Kinase; domain 1 148 240 - -
Glsi07g1636 542 FunFam probable serine/threonine-protein kinase At1g54610 236 479 - -
Glsi07g1636 542 FunFam probable serine/threonine-protein kinase At1g54610 140 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1636 Glsi-ChrGlsi07 53556368 53564397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1636 145 437 Core Cell Cycle Gene Families AT5G10270 51.768 5.67e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi07g1636 Pkinase 1.1e-68 CL0016