Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1628 ATGTCTTCCTTCACGATTTCTTCATTATCAAATCCCCAACTTTCGTCCACAGAACCGAAATGGAGCTACGACGTATTCTTCAGTTTTATGTTCGATAGTTATTTCACATCTTCTCTCAAATCTTCTCTAATAGCTGCTGAAATCAAAACATTCATCGACTTCAATGAAGACCGCGAAGAAGAGATCGCGCCTTCAGTATTAAGTGCCATCGAAGGGTCTGGAATCTCAATAGTCGTTTTCACAATTGAGTACGGTGACTCCAGAAGTCGTCTGCAGAAACTGGAGAAAATCATGGAGTGCCACAGAAGTATGGGTCAGGTGGTGTTGCCGGTTTATTATGATGTAAGTCTGTGGGAAGTGCGGAAGCAGAGTGGCAGATTTGGAGAAGCATTTGAAGGACTCATAAAGGGAATGTGCGGGAGGAAAGATAAGGAGATGAGATGGAGAAGAGAGCTCGCTGAAGCTACATTGCTGCCCGGTTGGGATTGGTCATCTTCCAGTTGGCATGCATTTAAATACTCTAGTCCTCCGAATGATTTCATTGATCTCTCACGGAAAGCAATTGCTTATTGTGGAGGACTACCATTGGCTCTTGAAGTCCTTGGGTCTCTTTTGCTTGATAAAACAAGACCTGAGTGGGAAATTTTATTCAAGAAACTTCCAAGATCTACCTCCAGTGCAGTACCAACTGTGCTTAAGCTAAGCTATGAATATTTAGAAGATTCGGTGAAAGATATATTCCTTGACATAGCATGCTTTTATGTGGGTAAAGACAGACAGTATGTTACAGAAATATTGAATGATAGTGGGTTTTCTGCAGAAGTCGCAGTAAGTGTGCTTATTATGCGGAGCCTTGTAAAAGTTGACAAGAGTAACAAGCTTGAAATGCATGGTTATTTTCAAGAGATGGGAAGAGGAGCCAATCCTTATAGGACAAAACCCAAATATATCTATGATGTATTCTTGAGTTTTAGAGGTGAAGAAACTCGCAAGGGTTTTGCTAGTCATCTTTGTTCCACTTTGAGAAATGCTGGCGTTGAGGTTTTCATGGATGACAGGCTCAAAAGGGGAGAATACATCTCAGCCTCACTGTTGCAAGCTATTGAAGGTTCTAGAATTTCAATAATTATTTTCTCAGCAGATTACGCTGGTTCTAGATGGTGCCTGCAGGAATTGGAGAAAATCATGGAGTGTCGAAGGAATACTGGTCAAGAGGTTCTACCTATATTCTATGGTGTGGAACCATCAGACGTACGTAGACAAATGGGGACTTTTGGAAAAGCATTGGAAGAACTCAGTCTGAGAATCTCGGTTAGCAAAGAGAAGATAGTGAGTTGGAGGAGAGCGCTCACTGAAGCTGCCAATATGTCTGGGTGGGCGTCGCACAACTATAGAACTGAAACAGATTTAATCGAGCATATTATTGAAAGTGTTAACATGAAACTAGATGATGACACATATTTGCATGTCGTTGACCACCCAGTGGGAGTGAAGTCTCGTTCGCAGGAGATTATTAAATTGTTAAGTGGTAAATCAAATAAGGTTATCATAGTAGGGATTTGGGGAATGGGGGGAATTGGAAAAACAACTATTGCCAAAGTCATTTACAATGAAATTGGTAGAAAATTTGAGGGAATCTTGAAAGCAAGAAAAAGGAAACTACTTAATATTGGATTGGGGAAAACAATAATGAAGGAAAGACTTTGTCATACAAGGGCACTTGTTGTACTTGATGATGTGGATAAGTTAGACCAACTTAGTGCTCTGTGCGGAAGTCGTGAATGGTTTGGTCGAGGGAGCAGAATAATCATTACCACTAGAGATGAGCATCTTCTGAATGTCCTTCAAGTGGATAATGTATACAATATGAAAGAATTGGACAATTATGAATCTCTTGAACTTTTCAGTTGGCATGCATTTAAGCAAGCAACTCCTATAGAAGATTTTGTTGAACTTTCAAGGAGGGTTATTGCTTACTCTGGAAGACTGCCATTAGCTCTTGAAGTCCTTGGCTCTTATTTGTTTGATAGGGCAATATTAGCTTGGGAAAGCGTTTTGCAAAAATTACAAGAAATTCCCAATGATCAAATACAGGAAAAGCTGAAAATAAGCTATGATGGTTTGAGCGATCATATGGAGAAAGATATATTCCTTGACGTCTGTTGTTTTTTTATTGGTAAAGACAGATATTATGTTACACAAATATTAAATGGTTGTGGCCTTCATGCAGAAATTGGAATTACTCGTTTGATAGAGCGGAGCCTTGTAAAAGTCAATAAGAATAACAAGTTTGAGATGCATGATTTACTACGACTCATGGGAAGAGAGATCATTCGTGAGAAGTCACCAGATGAGCTAGAGAAGCGTACTAGATTATGGGTTCATGACGAAGTGCTTGATGTGTTAATAACCAACACTGGATCAATAGCTGTCAAGGGATTAACTTTGAATTTGTCAAGAAACAATGAACTTTGCTTGAAAACCAAAGCATTTAAGAAGATGAAGAGACTCAAATTGCTTCAACTTGGTCATGTTAAACTTGCTGGAGGCTATGAATATCTGTCAAAAGAGTTACGATGGCTCTGTTGGCATGGATTTCCTTTAACATACATTCCTGAGGATTTCTATTTGAAAAATTTAGTTGCTATGGACTTAAAATACAGTAATCTCACACAAGTATGGAAGGAGAGCCAGTTGCTGGAGAGGTTGAAAATCCTCAATCTCAGTCATTCCCATCACTTGACAAGAACACCTGAATTTTCAGAATTTCCGAACCTTGAAAAGCTTATACTCAAAGATTGTCCATGCTTGTCTATGGTTCACCCAACCATTGGAGATCTTAAACATCTTATTATGTTAAACTTCAAGGACTGTAAAGAACTCAGTCATATCCCAAGAAGTTTATATAAGTTGAAATCTTTGAAAACTTTCATTCTTTCTGGTTGCTCAAAAATCGACAAGTTAGAAGAGGACATAGAGCAAATGGAATCACTGACAACTCTTATGGCCAATAACACTGCTATAGCACAAGTGCCCTTTCCATTATTGAGATCAAAAAGCATCAAATATGTGTCTTTTTGTGGATGTGAAGGATTAACACATGATGTATTTCCACCTCTCATTTGCTCTTTGATGTCACCTGCAAAAAATCCGAAGTCCCTTATTCAAGCATTTGTGAGCATGCCATTTTTGCTTCGGAGTCTTTCCCATGGGTTATTTGCCAAAAGTAGTCCAAAATTGGAAACCGTACCAAGTACATCTCAAATTTCATGCACAAAAAGTTCAGCATTAATTGGTTTTCATGATCAAGTTCGCCACATTAGGGGGTCTACAGATTTCTTGAGTTCTCTTATTATTCAAATGGGAGACTTCAACAAAGTTAACGATACTCTTTTAGAGAGTATCTTACAGGGATGGAGTGAAAGATTATTTGATGGTTGTTCTCTACCTGGTGACAATTATCCTGTTTGGCTAACATTCAAAGGTGAAGAATCTTCGGTAATGTTTAAAGTGCCTCAGGTTATTTGTCGTAGCGTGAAAGGGATGATCCTTTGCATTATCTATTTCTCCACCCAGGACAGTATGACATCTGTGTATCCTGTTAGTGTCTTGATAAAAAATTACACAAAGGCTACCATAGACTTTTGCAAGAGAGATGAATTAACTACGTGTGGTGATGAAGAGTGGCAGAGCATACTTTCTAATTTGGAGCCTGATCATGAGGTGGAGGTTATTGTAGCTTTTGGACATAAATTCACCGTGAAGAAGACCATAATATATCTGATATACGATGAAGACTGA 3801 0.3881 MSSFTISSLSNPQLSSTEPKWSYDVFFSFMFDSYFTSSLKSSLIAAEIKTFIDFNEDREEEIAPSVLSAIEGSGISIVVFTIEYGDSRSRLQKLEKIMECHRSMGQVVLPVYYDVSLWEVRKQSGRFGEAFEGLIKGMCGRKDKEMRWRRELAEATLLPGWDWSSSSWHAFKYSSPPNDFIDLSRKAIAYCGGLPLALEVLGSLLLDKTRPEWEILFKKLPRSTSSAVPTVLKLSYEYLEDSVKDIFLDIACFYVGKDRQYVTEILNDSGFSAEVAVSVLIMRSLVKVDKSNKLEMHGYFQEMGRGANPYRTKPKYIYDVFLSFRGEETRKGFASHLCSTLRNAGVEVFMDDRLKRGEYISASLLQAIEGSRISIIIFSADYAGSRWCLQELEKIMECRRNTGQEVLPIFYGVEPSDVRRQMGTFGKALEELSLRISVSKEKIVSWRRALTEAANMSGWASHNYRTETDLIEHIIESVNMKLDDDTYLHVVDHPVGVKSRSQEIIKLLSGKSNKVIIVGIWGMGGIGKTTIAKVIYNEIGRKFEGILKARKRKLLNIGLGKTIMKERLCHTRALVVLDDVDKLDQLSALCGSREWFGRGSRIIITTRDEHLLNVLQVDNVYNMKELDNYESLELFSWHAFKQATPIEDFVELSRRVIAYSGRLPLALEVLGSYLFDRAILAWESVLQKLQEIPNDQIQEKLKISYDGLSDHMEKDIFLDVCCFFIGKDRYYVTQILNGCGLHAEIGITRLIERSLVKVNKNNKFEMHDLLRLMGREIIREKSPDELEKRTRLWVHDEVLDVLITNTGSIAVKGLTLNLSRNNELCLKTKAFKKMKRLKLLQLGHVKLAGGYEYLSKELRWLCWHGFPLTYIPEDFYLKNLVAMDLKYSNLTQVWKESQLLERLKILNLSHSHHLTRTPEFSEFPNLEKLILKDCPCLSMVHPTIGDLKHLIMLNFKDCKELSHIPRSLYKLKSLKTFILSGCSKIDKLEEDIEQMESLTTLMANNTAIAQVPFPLLRSKSIKYVSFCGCEGLTHDVFPPLICSLMSPAKNPKSLIQAFVSMPFLLRSLSHGLFAKSSPKLETVPSTSQISCTKSSALIGFHDQVRHIRGSTDFLSSLIIQMGDFNKVNDTLLESILQGWSERLFDGCSLPGDNYPVWLTFKGEESSVMFKVPQVICRSVKGMILCIIYFSTQDSMTSVYPVSVLIKNYTKATIDFCKRDELTTCGDEEWQSILSNLEPDHEVEVIVAFGHKFTVKKTIIYLIYDED 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1628 1266 Gene3D - 22 168 IPR035897 -
Glsi07g1628 1266 SUPERFAMILY Toll/Interleukin receptor TIR domain 313 459 IPR035897 -
Glsi07g1628 1266 Pfam NB-ARC domain 502 546 IPR002182 GO:0043531
Glsi07g1628 1266 Pfam NB-ARC domain 565 706 IPR002182 GO:0043531
Glsi07g1628 1266 Gene3D Ribonuclease Inhibitor 804 963 IPR032675 -
Glsi07g1628 1266 Gene3D - 626 716 IPR042197 -
Glsi07g1628 1266 Gene3D - 169 246 IPR042197 -
Glsi07g1628 1266 SUPERFAMILY "Winged helix" DNA-binding domain 228 305 IPR036390 -
Glsi07g1628 1266 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 167 306 IPR044974 GO:0006952
Glsi07g1628 1266 SUPERFAMILY "Winged helix" DNA-binding domain 695 802 IPR036390 -
Glsi07g1628 1266 FunFam Disease resistance protein (TIR-NBS-LRR class) 314 484 - -
Glsi07g1628 1266 SMART till_3 317 456 IPR000157 GO:0007165
Glsi07g1628 1266 SMART till_3 22 158 IPR000157 GO:0007165
Glsi07g1628 1266 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 154 IPR035897 -
Glsi07g1628 1266 Gene3D Ribonuclease Inhibitor 964 1095 IPR032675 -
Glsi07g1628 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 719 IPR027417 -
Glsi07g1628 1266 Gene3D - 312 484 IPR035897 -
Glsi07g1628 1266 Gene3D - 485 549 IPR027417 -
Glsi07g1628 1266 Pfam TIR domain 23 167 IPR000157 GO:0007165
Glsi07g1628 1266 Pfam TIR domain 318 479 IPR000157 GO:0007165
Glsi07g1628 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 250 IPR027417 -
Glsi07g1628 1266 Coils Coil 985 1005 - -
Glsi07g1628 1266 PRINTS Disease resistance protein signature 517 532 - -
Glsi07g1628 1266 PRINTS Disease resistance protein signature 969 985 - -
Glsi07g1628 1266 PRINTS Disease resistance protein signature 660 674 - -
Glsi07g1628 1266 Gene3D - 550 620 IPR027417 -
Glsi07g1628 1266 SUPERFAMILY L domain-like 780 1062 - -
Glsi07g1628 1266 ProSiteProfiles TIR domain profile. 316 482 IPR000157 GO:0007165
Glsi07g1628 1266 ProSiteProfiles TIR domain profile. 21 188 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1628 Glsi-ChrGlsi07 53217566 53232107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1628 177 305 WRKY Transcription Factor Family AT4G12020 31.008 1.46e-11 67.4