Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1624 ATGGGTATTTCTAGGGATTCCATGCACAAGAGGCGAGCTACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGGAAGTATGAGCTTGGTCGTCAGCCAGCAAACACTAAACTATCGAGCAACAAGACAGTCAGAAGAATTCGTGTCAGAGGTGGCAATGTGAAATGGAGGGCTTTGCGATTGGATACAGGAAATTTTTCGTGGGGTAGTGAAGCTGTAACTCGCAAGACTCGTATACTAGATGTGGTTTACAATGCCTCAAACAATGAGCTCGTGCGAACTCAGACCCTGGTGAAGAGTGCTATCATTCAGGTTGATGCTGCTCCATTCAAGCAGTGGTACCTCCAGCATTATGGTGTTGATATTGGAAGGAAGAAGAAAACAGCTGCCAAGAAGGACTCTGCAGAGGAGGGTGAAGCTGCTGTTGAAGAGACAAAGAAAAGTAACCATGTACAGAGAAAACTGGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCCCACATTGAAGAGCAGTTTGGTGGTGGCCGATTGCTAGCTTGCATTTCTTCTCGCCCTGGTCAATGTGGCAGAGCCGATGGGTACATATTGGAAGGCAAGGAGTTGGAGTTTTACATGAAGAAACTTCAAAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTTGA 660 0.4712 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGEAAVEETKKSNHVQRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1624 219 NCBIfam ribosomal protein eS8 1 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Glsi07g1624 219 FunFam 40S ribosomal protein S8 161 214 - -
Glsi07g1624 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Glsi07g1624 219 CDD Ribosomal_S8e_like 5 196 - -
Glsi07g1624 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 214 IPR001047 GO:0003735|GO:0005840|GO:0006412
Glsi07g1624 219 Gene3D - 26 212 - -
Glsi07g1624 219 MobiDBLite consensus disorder prediction 11 26 - -
Glsi07g1624 219 Gene3D Ribosomal protein S8e, subdomain 108 175 IPR042563 -
Glsi07g1624 219 FunFam 40S ribosomal protein S8 109 175 - -
Glsi07g1624 219 Pfam Ribosomal protein S8e 5 196 IPR022309 -
Glsi07g1624 219 FunFam 40S ribosomal protein S8 32 160 - -
Glsi07g1624 219 MobiDBLite consensus disorder prediction 133 165 - -
Glsi07g1624 219 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1624 Glsi-ChrGlsi07 53087062 53089550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1624 1 219 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.909 3.66e-129 361