Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1622 ATGGAAAACGAATTCTTTCTAAGTGCTGGTGTCCCTGCTTCCCTGCACTTCGAACCTTCATCTTCTTCAATGCCCACTTGGCAATCACTGTCATCCGCCATGGATATTCAAGCTACGGTTCTGAATTGTTCTGAGCAAACCCAAGATTGCTTTTACAACCCTACATGGGAAAAGTCAACGGATCATGGCCTTCAATTCGATTCTGCCCTGAGTTCGATGGTTTCTTCCCCTGCAGCGTCCATTTCCAATATGTCCAATGAGAATTTCGTGATCAGGGAATTGATAGGAAAATTGGGAAACATTGGCGGCTCCGGCGAGATCTCACCACATTCTCAGCCTCTGGTTGGGGCACCTTCTTACATTAATGGCAATAACAGCACTAATAATTCATGTTATAGCACTCCTTTGAGCTCTCCTCCTAAGATAAACATCGCGCCAGTTATGAACCACCTAGTAAAAGAGAACTTGTCCAGTTTGGGGAAATCCATGGTTCTAAATTCCAGTGTTGCAGAATTCTCAGCTGATCCTGGTTTTGCAGAGAGGGCTGCCAAGTTTTCTTGCTTTGGCAGTAGGAGTTTCAATGGCAGGACGAACCAACTAGGACCGAAGAATAATGCTGAATTCACTCAGAGATCTACTCCGCTAATAGAAAATGGGAAGCTCACTAGAGTCTCGAGTACTCCATCTCTGAAAGTACTTGGAGGATCTCAAATGGGTGCTCAGGAAAACAAGAATTCTCCAATACAGGACCATATGGAGGTGGCCAATTCTCAAGAGGAATCTACACTCTCTGAGCAAACCCCAAATGGGGAAAATGGAGTGAAACATTCCCCGGATACGAACTCCAAGAAAAGAAAAGCTTCTTCCAAGGGAAAAGCCAAAGAAATTTCAACTCCAAACAATCTTCCCAAGGCTCCTGAAGTCAACGAAGATTCAAACGCTAAGCGCAGCAAGCCAAACGAGGGTGAAGGAAATGAAAATGGCCCTCTGAAAGAGGAGGAAGAGTCAAAAGGAGGTATCAGTAATGCAGGAGATGATAAACAGAACAAGAGCAGCTCAAAACCTCCTGAACCTCGAAACGACTACATTCATGTCAGAGCAAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAAAGAGTCCGAAGGGAAAAAATCAGTGAGAGGATGAAACTTCTGCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTGCAGTCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAACTGGCTTCTGTGAACACCAGGCTGGATTTTAATATTGACAGTCTAATCTCAAAAGATATATTTCAATCAAATGACTCTTTGGCACACCCAATATTCCCCTTAGATTCCTCTGCACCAGCCTTTTATGGGCACCAGACACAGCAAAACCCAGCAATCCACAATAACATTCTTAATGGAACTGTGGCCCACAGCACAGTGGACCCATTAGATACTGCTGCTCTGTGCCAAAACCTTGGCATGCACTTACCTCCCCTTAATGGATTTAATGAAGGAGGTTCTCAGTTTCCAATAACATTCTGTGAGGATGACCTCCACACCATTGTTCAGATGGGATATGGCCAAACTGCAAATGGGAATTCACCCACTCATTCACAGAACTTCAACGGCTCAAATCAAGTTTCCCATTTGAAAATTGAGCTCTAA 1716 0.4411 MENEFFLSAGVPASLHFEPSSSSMPTWQSLSSAMDIQATVLNCSEQTQDCFYNPTWEKSTDHGLQFDSALSSMVSSPAASISNMSNENFVIRELIGKLGNIGGSGEISPHSQPLVGAPSYINGNNSTNNSCYSTPLSSPPKINIAPVMNHLVKENLSSLGKSMVLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTNQLGPKNNAEFTQRSTPLIENGKLTRVSSTPSLKVLGGSQMGAQENKNSPIQDHMEVANSQEESTLSEQTPNGENGVKHSPDTNSKKRKASSKGKAKEISTPNNLPKAPEVNEDSNAKRSKPNEGEGNENGPLKEEEESKGGISNAGDDKQNKSSSKPPEPRNDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFNIDSLISKDIFQSNDSLAHPIFPLDSSAPAFYGHQTQQNPAIHNNILNGTVAHSTVDPLDTAALCQNLGMHLPPLNGFNEGGSQFPITFCEDDLHTIVQMGYGQTANGNSPTHSQNFNGSNQVSHLKIEL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1622 571 Pfam Helix-loop-helix DNA-binding domain 375 422 IPR011598 GO:0046983
Glsi07g1622 571 SMART finulus 377 427 IPR011598 GO:0046983
Glsi07g1622 571 MobiDBLite consensus disorder prediction 309 341 - -
Glsi07g1622 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 440 IPR036638 GO:0046983
Glsi07g1622 571 Gene3D - 368 443 IPR036638 GO:0046983
Glsi07g1622 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 421 IPR011598 GO:0046983
Glsi07g1622 571 MobiDBLite consensus disorder prediction 255 361 - -
Glsi07g1622 571 Coils Coil 418 438 - -
Glsi07g1622 571 MobiDBLite consensus disorder prediction 194 214 - -
Glsi07g1622 571 FunFam Basic helix-loop-helix transcription factor 368 440 - -
Glsi07g1622 571 CDD bHLH_AtBPE_like 361 446 - -
Glsi07g1622 571 MobiDBLite consensus disorder prediction 255 276 - -
Glsi07g1622 571 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 256 480 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1622 Glsi-ChrGlsi07 52963506 52965959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1622 1 530 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.037 9.78e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g1622 HLH 4.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1541 06 60026953 60029442 Glsi07g1622 07 52963506 52965959 CCT