Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1613 ATGGCCAAGCCGGGAGTGTTGGAATCTGATCCATCGGTGATGGCAAAGACCATAGAGTTGAAGAAGGAGTTGCAGAGATTGATGAAGTCTATTGTTGACGATGAGGATTGCAGCATCCAAACCATTGATACAGCCATGGAAACTCTCGGTGTCCTCAAAGAATTGAAGCTGAGAAAGGGATCACCAATGTCTTTGAAGCTGCACAAAACTGCGTCTTGCCCAGAAGAATTTAAGTGCCCTCTTTCCAATGAATTGATGAGAGATCCTGTCATTGTGGCCTCAGGGCAGACATATGACAGAACATTCATTCAAAAATGGCTTAAAGCCGGAAACCGGACTTGCCCTCGAACGCAGCAAGTTCTTTCACACACTGTCCTCACTCCAAATCACTTAATAAGGGAAATGATTAAGCAATGGTGTAAAAACCAAGGGATTGAATTATCCAACACTGTTCACTATATTAATGAGGAAGGCATAGCAGAAGCTCACCATGATCATTTTCTTTCTTTGCTTGAGAAAATGTCTTCAGCACTTTCTGAACAGAAAGCAGCTGCAAAGGAGCTCCGCTTATTGACAAAGAAGATGCCTTCCTTCCGGGTACTCTTTGGCGAGTCTGTAGATGCCATTCCCAAATTGCTTAAACCAATCTCCGGGAGTGACTCTTTCGCTAATGTTCACCCTGATCTCCAGGAAGATGTAATCACAATACTATTGAATATCTCAATCCATGATAACAACAAGAAGCTTGTAGCAGAAACTCCATTGGTAATTCCTCTCCTTATGAAAGCATTGAGATCAGGAACAATCGAAACAAGAAGCAATGCAGCAGCAGCCCTTTTCACTTTGTCAGCTCTTGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCTTTAAAGCCACTAATTGACCTTGTAGAAGAAGGGCATCCCTTGGCCATGAAAGATGTTGCTTCAGCAATTTTTACCTTATGTGTCATTCATGAGAACAAGGCAAGAGCAGTGAAGGATGGTGCAGTGAAAGTGATTGTGAGGAAGATCATGGACCGGGTTCATGTTGACGAGTTACTAGCTATCCTTGCACTGCTCTCAAGTCACCAGCAAGCTGTACAGGACATGGGAGAGCTTGGAGCTGTTCCAAGCTTGTTGAGCATAATCCGGGAGAGCACCTGCGAACGCAACAAAGAAAATTGCGTTGCAATCCTTCAGACTATCTGTCTATATGATAGAACCAGGTTGAAGGAAATAAAGGAAGAGGAGAACAGTCATAGAACAATCTCTAAGCTTGCCCAAAATGGAACTTCGAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGATTAAGCAGGGTTGTTAATATCACACACACTGCATAA 1374 0.433 MAKPGVLESDPSVMAKTIELKKELQRLMKSIVDDEDCSIQTIDTAMETLGVLKELKLRKGSPMSLKLHKTASCPEEFKCPLSNELMRDPVIVASGQTYDRTFIQKWLKAGNRTCPRTQQVLSHTVLTPNHLIREMIKQWCKNQGIELSNTVHYINEEGIAEAHHDHFLSLLEKMSSALSEQKAAAKELRLLTKKMPSFRVLFGESVDAIPKLLKPISGSDSFANVHPDLQEDVITILLNISIHDNNKKLVAETPLVIPLLMKALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLVEEGHPLAMKDVASAIFTLCVIHENKARAVKDGAVKVIVRKIMDRVHVDELLAILALLSSHQQAVQDMGELGAVPSLLSIIRESTCERNKENCVAILQTICLYDRTRLKEIKEEENSHRTISKLAQNGTSRAKRKASGILERLSRVVNITHTA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1613 457 CDD RING-Ubox_PUB 74 126 IPR045210 -
Glsi07g1613 457 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Glsi07g1613 457 Gene3D - 205 349 IPR011989 -
Glsi07g1613 457 SUPERFAMILY ARM repeat 168 448 IPR016024 -
Glsi07g1613 457 SMART arm_5 365 406 IPR000225 GO:0005515
Glsi07g1613 457 SMART arm_5 285 325 IPR000225 GO:0005515
Glsi07g1613 457 SMART arm_5 243 284 IPR000225 GO:0005515
Glsi07g1613 457 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Glsi07g1613 457 Gene3D - 352 452 IPR011989 -
Glsi07g1613 457 Coils Coil 171 191 - -
Glsi07g1613 457 FunFam RING-type E3 ubiquitin transferase 157 453 - -
Glsi07g1613 457 SUPERFAMILY RING/U-box 72 147 - -
Glsi07g1613 457 PANTHER U BOX DOMAIN-CONTAINING 44 447 - -
Glsi07g1613 457 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Glsi07g1613 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 146 IPR013083 -
Glsi07g1613 457 FunFam RING-type E3 ubiquitin transferase 72 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1613 Glsi-ChrGlsi07 52229666 52232232 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1613 135 457 U-box Gene Family AT3G07360 62.236 2.63e-135 390