Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1544 ATGCAATTCTTGGAAATGGATTCTCATGCCGAAGAGTTGCCTCAATACATACATATAAATCAGAATGAATTTTTGAATAGCAGGGATGTGAAGCAGAAGGAGAAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAGTGCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCTCTGTGGTATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGTTTGCAGTCAGCCAAATTGTGA 528 0.3883 MQFLEMDSHAEELPQYIHINQNEFLNSRDVKQKEKDIAICECKYNASDPDSACGDRCLNVLTSSECTPGYCLCGIFCKNQRFQKCEYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCLQSAKL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1544 175 SMART shorttest3 35 87 IPR006560 GO:0005634|GO:0042054
Glsi07g1544 175 Pfam AWS domain 48 85 IPR006560 GO:0005634|GO:0042054
Glsi07g1544 175 Pfam SET domain 99 170 IPR001214 GO:0005515
Glsi07g1544 175 ProSiteProfiles SET domain profile. 83 175 IPR001214 GO:0005515
Glsi07g1544 175 ProSiteProfiles AWS domain profile. 35 86 IPR006560 GO:0005634|GO:0042054
Glsi07g1544 175 PANTHER SET DOMAIN PROTEINS 10 169 - -
Glsi07g1544 175 SUPERFAMILY SET domain 6 169 IPR046341 -
Glsi07g1544 175 Gene3D SET domain 1 175 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1544 Glsi-ChrGlsi07 48103364 48106064 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1544 70 169 C2H2 Transcription Factor Family AT2G23740 37.719 8.75e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi07g1544 SET 7.9e-08 No_clan