Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1542 ATGCAATTCTTGGAAATGGATTCTCATGCCGAAGAGTTGCCTCAATACATACATATAAATCAGAATGAATTTTTGAATAGAAGGGATGTGAAGCAGAAGGAGAAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAGTACTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCTCTGTGGTATCTTTTGCAAAAATCAGAACACAGTTTTTTAGATTTCAAAGTGTGAATATGCAAAAACAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGTCAGCCAAATTGTGAGACACGGAAATGA 546 0.381 MQFLEMDSHAEELPQYIHINQNEFLNRRDVKQKEKDIAICECKYNASDPDSTCGDRCLNVLTSSECTPGYCLCGIFCKNQNTVFXISKCEYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCQPNCETRK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1542 181 Pfam SET domain 103 178 IPR001214 GO:0005515
Glsi07g1542 181 Gene3D SET domain 1 181 IPR046341 -
Glsi07g1542 181 ProSiteProfiles SET domain profile. 87 181 IPR001214 GO:0005515
Glsi07g1542 181 PANTHER SET DOMAIN PROTEINS 10 181 - -
Glsi07g1542 181 SMART shorttest3 35 91 IPR006560 GO:0005634|GO:0042054
Glsi07g1542 181 ProSiteProfiles AWS domain profile. 35 86 IPR006560 GO:0005634|GO:0042054
Glsi07g1542 181 SUPERFAMILY SET domain 6 181 IPR046341 -
Glsi07g1542 181 SMART set_7 92 181 IPR001214 GO:0005515
Glsi07g1542 181 Pfam AWS domain 48 80 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1542 Glsi-ChrGlsi07 48006370 48009084 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1542 70 176 C2H2 Transcription Factor Family AT2G23740 37.190 7.53e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi07g1542 SET 2e-11 No_clan