Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1539 ATGGAATGGCTTACATCTGACCTCTCAAAATTCAGGCATTTGGCTTCATCCAGGGATATGAAGCAGAAGGAGAAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAGTGCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCTCTGTGGTATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAAGCAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGAGTTGGAATATTTGCAAAACAAGATATTCCTATTGGAGCTGAATTGGCATATGATTATAACTTTGAATGGTTTGGTGGTGCAAAGGTCTGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGCATCAGACTTTGGAGACTAAATTGGAGGACATAGATGGTTTGTTAATAAGAAGCATTATGAATTCAAGTTTTAATGGTTCAGTGTTGTTGACCTGTTGGAGCTTTGGGTGA 738 0.397 MEWLTSDLSKFRHLASSRDMKQKEKDIAICECKYNASDPDSACGDRCLNVLTSSECTPGYCLCGIFCKNQRFQKCEYAKAKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSXVGIFAKQDIPIGAELAYDYNFEWFGGAKVCCLCGAAKCSGFLGAKSRGFQHQTLETKLEDIDGLLIRSIMNSSFNGSVLLTCWSFG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1539 245 SUPERFAMILY SET domain 28 199 IPR046341 -
Glsi07g1539 245 ProSiteProfiles AWS domain profile. 25 76 IPR006560 GO:0005634|GO:0042054
Glsi07g1539 245 ProSiteProfiles SET domain profile. 78 179 IPR001214 GO:0005515
Glsi07g1539 245 Pfam SET domain 89 179 IPR001214 GO:0005515
Glsi07g1539 245 PANTHER SET DOMAIN PROTEINS 18 209 - -
Glsi07g1539 245 Pfam AWS domain 38 75 IPR006560 GO:0005634|GO:0042054
Glsi07g1539 245 SMART shorttest3 25 77 IPR006560 GO:0005634|GO:0042054
Glsi07g1539 245 SMART set_7 78 185 IPR001214 GO:0005515
Glsi07g1539 245 Gene3D SET domain 5 219 IPR046341 -
Glsi07g1539 245 ProSiteProfiles Post-SET domain profile. 186 202 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1539 Glsi-ChrGlsi07 47964111 47966103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1539 60 201 C2H2 Transcription Factor Family AT2G23740 31.285 1.04e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi07g1539 SET 2.9e-08 No_clan