Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1512 ATGGCTTCTCCACCTCCTTTGACCCTAAACGTTGTCGGATCAGACTCTTCCACTGACACTAACACTATCGATACTCCTGCTCTTCATTCATCCACTTTGCAGAACCTCAACCCAAGCATTCTCATTATTGTAATCGTCATCGCCGTCACCGTCATCGTCTCTCTTGCTCTCTGTTTGCTCCTCCGCCACCTCAACGTCCGCTGCCTCCACCGGCTATCTCCGTCATCGGCAAATGCATCATCAGCAACTGCAACGCCTGTGTTCTCTTCCAGTCGGCGTGTCTCGCCAGAAACAGCTTCGTCCTCCATGCTCGATTCCCTACCTCTGTTTACTTTTTCTTCCATTACTCGCCGCACCTCCTCCACCACCGGTGGAGACTGCGCTGTTTGCCTCTCGAAATTCGAACAAAGCGACCTCCTTCGCCTCCTCCCGCTCTGTTGCCATGCCTTCCACGCCGAATGTATCGACACCTGGCTTCAATCCAATCTCACCTGTCCACTCTGCCGATCCACTATTTTTGCCTCTGATTCAGACCTAATGAAAGTTCTCCGATCCTCTTCTGTCAGTGCTGGCGATAGCTTCCGGCTCGAAATTGGGAATATCAGCCGCCGTGGCACAGCATCGGACGCCACCGGAGAAGCGCGTGGGAGGTCGAGGTCTTATTCCGTAGGATCGTTCGAGTATTTAGTGGAGGAGGACTCCGAGGTTCCTATCAGCTACGCCCACAGGAGGAGCGTATCCGATAATAAGGATGAGACAGTGGTAGAGTCTCAGGCGACTCAGCCGGTCCATGACGCTAGCTTAGCCGCTGATGTAGCCAGTGGAAGGAGCTGGCTGAAGGAATACGTTGACAGGCTCTCGTCTTCGATATCATCCCAAACGCTGTCGTTTCGAAGCTCTGGAAGGTTCTTTACTGGAGGCAGCCACCGAAGTGATAACTTTTCGGCCGAGGACTATGACGTGGAAGCCAACCGAGTCGGAGAGGAAATCAGCGAAATGTTTCGATGGCTCTCCGGGGTTTGA 1023 0.5327 MASPPPLTLNVVGSDSSTDTNTIDTPALHSSTLQNLNPSILIIVIVIAVTVIVSLALCLLLRHLNVRCLHRLSPSSANASSATATPVFSSSRRVSPETASSSMLDSLPLFTFSSITRRTSSTTGGDCAVCLSKFEQSDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSTIFASDSDLMKVLRSSSVSAGDSFRLEIGNISRRGTASDATGEARGRSRSYSVGSFEYLVEEDSEVPISYAHRRSVSDNKDETVVESQATQPVHDASLAADVASGRSWLKEYVDRLSSSISSQTLSFRSSGRFFTGGSHRSDNFSAEDYDVEANRVGEEISEMFRWLSGV 340
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1512 340 CDD RING-H2_EL5-like 126 169 - -
Glsi07g1512 340 SUPERFAMILY RING/U-box 111 175 - -
Glsi07g1512 340 SMART ring_2 127 168 IPR001841 -
Glsi07g1512 340 Pfam Ring finger domain 126 169 IPR001841 -
Glsi07g1512 340 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Glsi07g1512 340 FunFam E3 ubiquitin-protein ligase ATL6 88 175 - -
Glsi07g1512 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 33 252 - -
Glsi07g1512 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 173 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi07g1512 Glsi-ChrGlsi07 38714347 38715369 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1512 26 196 C3H Transcription Factor Family AT4G28890 32.955 2.58e-23 98.2