Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1490 ATGGATTACTTCTCTTGTATTGCGAGGAGGACCCGTCGCCAGACGGATTTGTACATTGAGAGGCTCTTCCGGTGCTCTTCTGGGCATGGAGATGAAAAAGGGTTATCTGGGTCTGGCGCTTCATTGCAATCGAAGGGGAGAAAGAGGACAAAAAGCCGATATGATTCGTGGAGCAGGGACAATGCTGTAGAGTTTGCAGAGAGGGAACTGGACGAGCAGGATGTGCCAAATATGGCTGGTTTTCATTCGGTGGATAGAAGAAAAGTAAGCAGATTGGAGGAAAAGGTCAGTGAATCTGATGTGGTATTTTTGGGAGAATGCGCGAGTGAAAAACAAAGGGACTCTGTTTCGTTCAGTTCTCAGCGGCAGACATCATCTGAGGGCCCTAAAGCTGATAAGGGTACAAGGGTTTTGAGTGATGAGGTTGACTCAGTGGAGGTGATTGAAATAGATGATAGTGATGACTGCTGCGACGAAGATTTGGAGCATTCCCAAGGGGGGTTGACCACTGCATTTAAAGGATTTGATACTGATATTAATGTTGACGAAGACCAAAACGAGGAGATTGGAGTTGAAGGAGGTGATGATTTTGTTGATAAAGGTGAAAATTTTGACAATGTTGGTTGTGACCCCATTGAGGATGAGCGGGTGGAGTCCGGTTCAGCTGCAAGAAATTTGGGTTTTGATAAGCCCGTTACAATTGATTTGGTTGGAGATAGTGAGAGTAGCCAAGAAGAACAGGGGGAGAAGACATCTATTGAAGTCGCAGTAATTGGTTCAAAATTTGGTTTTGATGATGATCTTTCATCTTCAACTGACAGTCAGGATGACGACTCCGTAGATGAAGATTTTAAAGTGGAGGAGAGTGAGATCTTCAGTAGTGAAGACAGCTGTAACTCCTATGACAATGAAGAAATATCTGAAGCCGGTGAAGAAGAACGTTCTGGGAGTAAAGAAGCTGAGAAAGAAAGAATTGATGATAGTTTCAGTGCTGATGCTGCAGAGTTTGGTGATTATCAAGAGAATTTAGGTTGCTCTAAGCTTTCTGAAGAAGCAAAAATTGATAACACTAAACCAGATGGGGCTGGGGGAAAAGATAATGTCAATGTTACCGAGAGAGGCCATAGCAGTGTTTCACTGCAGAATAGTCAGCGGGAGAAAGGAGATTCAACTGAGATCTCTAAAAGTATGGATAATAAGAAGGGAAGGGAGGCCAACAAGGAGACTGAGAAAATTGAGGCCAAGGCGAATGACAAAATGAGTATTGATGCTCAAAAAAGAAAAGTGCATTTAAATAAATTTACAGGTGTAAAAGAAGGGAAGTTAATAAATAAGGGAAAAAAAGGTAGTTTCTGTTGTAATGCTGAAAGATTGGGAACTGAGCCTATGGATACAGGCAATCCTAGTGTTGCAATTTCTAAGAATCAGAAAAAGTTGGAGCCTTCAAATACCCTCTTTAAGGGGGTTGAACACAAACATAAAGCAGAGGAAGAGGAGAAGACTGGGAAGGATGGAGACAAGATAAATGACAGGGTGGACAAAAATGTTCTTGAGGAAAAAGCACGGGCATATAAAAAAACTTGTCAAAAGGAACGAGAGTTTAGAATTCAGAGCAAGTCAGCCAGGCCAAAGGAGTTACATATTATTGAACTCCTTGCTAATTGCATTTGGGGCAAGCGTAATGCCATAAAAGATAATTCAATTCTGTTAGAAGAAAAGCTTAGTGATATTCACCGGCAAGATACACAGCCCCCAGCTGGTGGAGAAACACTTCCTCTGAAATTTACTTTTGGGGTTAAGAAGCCTGAAGCAGTGGAAAAAACTCAGTCTGAGATGGAGTTGGATATGTTGTGGGAAGAAATGGAAACTTGCCTCAGATTTGAAGAAATTGGTTCCCTGATTGGTAATAGGGAGACAAATGAGACAGGAGGACATAAAGGAAGTCCAGTCAACCTTTGTAAGCACGACTTCTTCCTTGATGAGCAGATTGGGATATATTGCAAAATTTGCCTTTTCATAGCCACTGAGATCAAAGATGTTTTGCCACCAATGTTGGAGAACGTTCCTTTGGAGGAATCAGGAAGGAGGTCACCATTTGGTGAAGTGGATGCCTCAGTCTTTGATGAAATTCGGTTTAATAAATCTGGTGGTCATTCAGATGCTGTTTGCTACTGTAATGAAGGTACAGTTTGGGATATAATTCCTGAGGTCAAAGAAAGCATGTATCCTCATCAACAAGAAGGTTTCGAGTTTATTTGGACAAATTTGGCAGGAACCATTGACCTTCACAAGTTAAAGAATGCTGATCCAAATAGTGAAGGCGGATGCATTATTTCTCATGCCCCTGGAACTGGAAAGACACGTTTGGCCATTATGTTTCTTCATACATATTTGGAAATTTTTCCAAAATGCCAACCTGTTATTATTGCTCCTGCTGGCTTACTGTTTACTTGGGAAGATGAGTTTAGAAAGTGGGACATAGGAATTCCATTCCATAACCTGAATAATCTTGATTTTTCAGGAAAAGAACATGTGGCTGCCATCAATAATGTGAAGATGAGTAGGCACCAATGCCAGAATAAGGATTTCATACGTATGGTGAAGTTGTTTTCATGGTGCAATGGGAAGAGCATTCTAGGAATTAGCTACAGTTTGTATGAGAAGCTTGCTGGGGAAAAATCCAAAGCCAGCATTGAAACCAAGAAAAGTAGATCTGAGAGGGGAACACTTCTTAAAAGTGAAGTGATGGGGAAGGTTCTGCGAGACAAGCCTGGTTTGTTAGTTCTAGATGAAGGGCACACTCCTCGAAATCATAGGAGTCAAATCTGGAAGGTTCTATCAGAAATTAAAACTGAGAAGCGAATCATCCTTTCGGGGACTCCTTTCCAGAATAATTTTCTGGAACTCTACAATACTCTGTGCTTAGTCAAACCATCCTTTCCTGACAGTATACCACAAGAGCTCAAAAAATTCTGCCAGAGGGGACTAATGCAGGAAAAGAAAGCGTGTAAAGGTGTGAGATGGGAACAGGTTTCTTCTTTCAATTCAACAGGAATTTCTGCTGATAAAATAATACACCAATTAAAATTTTTGATGGCTCCATTTGTTCATGTTCACAAAGGTAGCATTCTTCAAAAAAATCTTCCTGGATTGAGAGATTGTGTGGTGATTTTGAATCCAGGTAATGTACAGAAAAGGCTCCTAGAGAGCATTGAATGGTCTCAGAATACATTCGAATTTGAACACAAGTTGGCCTTGGTCTCCATACATCCATCACTTTTCCTCTGCTGCTCTCAATCAGAAAAGGAAGAATCTGTAGTCAACAGGGATCAGTTAGAAAAGCTTAAACTGAACCCCCGTGGAGGTGTTAAAACAAGATTCCTAGTGGAGTTTGTCCAGCTTTGTGAGGCACTGAATGAGAAGGTTCTTGTTTTCAGCCAGTACATTGATCCTTTGTACTTAATTATGGACCAACTGATTTCAATTTTTAATTGGTCTGAGGGGAAGGAAGTGTTGCATATGCATGGCAAGCTTGATCAAAAGCAAAGGCACTCCCTGATTCATGGCTTCAATGATCCAAACAGCCAAGTGAAGATATTACTTGCATCAACAAAAGCATGTTCTGAGGGAATTAATTTAGTTGGAGCTTCAAGGGTTGTTCTACTGGACGTTGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATCAGCCGGGCATTTAGACTTGGCCAAAAGAGAGTTGTCTACACTTATCATCTCATCACACAGGGGACAACCGAATGCCAAAAGTATTGTAAACAGGCAGAAAAGGACCGGATATCTGAACTGGTATTCTCTGCAGGAAATAATGAAAATGATAAGCTAAAGAGTTCTGCAGTTTCAGAGGATAAAGTTCTTGATGTGATGGTTCAGCATGACAAACTCAAGGATATGTTTAATGACATAATCTTCCAGCCGAAGGAGAGAGATTTAGTTGAGAGTTTTGGTTCTTGA 3990 0.411 MDYFSCIARRTRRQTDLYIERLFRCSSGHGDEKGLSGSGASLQSKGRKRTKSRYDSWSRDNAVEFAERELDEQDVPNMAGFHSVDRRKVSRLEEKVSESDVVFLGECASEKQRDSVSFSSQRQTSSEGPKADKGTRVLSDEVDSVEVIEIDDSDDCCDEDLEHSQGGLTTAFKGFDTDINVDEDQNEEIGVEGGDDFVDKGENFDNVGCDPIEDERVESGSAARNLGFDKPVTIDLVGDSESSQEEQGEKTSIEVAVIGSKFGFDDDLSSSTDSQDDDSVDEDFKVEESEIFSSEDSCNSYDNEEISEAGEEERSGSKEAEKERIDDSFSADAAEFGDYQENLGCSKLSEEAKIDNTKPDGAGGKDNVNVTERGHSSVSLQNSQREKGDSTEISKSMDNKKGREANKETEKIEAKANDKMSIDAQKRKVHLNKFTGVKEGKLINKGKKGSFCCNAERLGTEPMDTGNPSVAISKNQKKLEPSNTLFKGVEHKHKAEEEEKTGKDGDKINDRVDKNVLEEKARAYKKTCQKEREFRIQSKSARPKELHIIELLANCIWGKRNAIKDNSILLEEKLSDIHRQDTQPPAGGETLPLKFTFGVKKPEAVEKTQSEMELDMLWEEMETCLRFEEIGSLIGNRETNETGGHKGSPVNLCKHDFFLDEQIGIYCKICLFIATEIKDVLPPMLENVPLEESGRRSPFGEVDASVFDEIRFNKSGGHSDAVCYCNEGTVWDIIPEVKESMYPHQQEGFEFIWTNLAGTIDLHKLKNADPNSEGGCIISHAPGTGKTRLAIMFLHTYLEIFPKCQPVIIAPAGLLFTWEDEFRKWDIGIPFHNLNNLDFSGKEHVAAINNVKMSRHQCQNKDFIRMVKLFSWCNGKSILGISYSLYEKLAGEKSKASIETKKSRSERGTLLKSEVMGKVLRDKPGLLVLDEGHTPRNHRSQIWKVLSEIKTEKRIILSGTPFQNNFLELYNTLCLVKPSFPDSIPQELKKFCQRGLMQEKKACKGVRWEQVSSFNSTGISADKIIHQLKFLMAPFVHVHKGSILQKNLPGLRDCVVILNPGNVQKRLLESIEWSQNTFEFEHKLALVSIHPSLFLCCSQSEKEESVVNRDQLEKLKLNPRGGVKTRFLVEFVQLCEALNEKVLVFSQYIDPLYLIMDQLISIFNWSEGKEVLHMHGKLDQKQRHSLIHGFNDPNSQVKILLASTKACSEGINLVGASRVVLLDVVWNPSVERQAISRAFRLGQKRVVYTYHLITQGTTECQKYCKQAEKDRISELVFSAGNNENDKLKSSAVSEDKVLDVMVQHDKLKDMFNDIIFQPKERDLVESFGS 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1490 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1130 1298 IPR001650 -
Glsi07g1490 1329 Pfam SNF2-related domain 752 1070 IPR000330 GO:0005524|GO:0140658
Glsi07g1490 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 731 993 IPR027417 -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 30 54 - -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 208 336 - -
Glsi07g1490 1329 FunFam SNF2 domain-containing protein CLASSY 3 1049 1312 - -
Glsi07g1490 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 923 1286 IPR027417 -
Glsi07g1490 1329 CDD SF2_C_SNF 1124 1253 - -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 114 130 - -
Glsi07g1490 1329 Pfam Helicase conserved C-terminal domain 1135 1242 IPR001650 -
Glsi07g1490 1329 Gene3D - 1049 1322 IPR027417 -
Glsi07g1490 1329 SMART helicmild6 1153 1242 IPR001650 -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 490 509 - -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 370 387 - -
Glsi07g1490 1329 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 1322 IPR044567 GO:0080188
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 270 285 - -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 114 139 - -
Glsi07g1490 1329 Gene3D - 724 1017 IPR038718 -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 388 421 - -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 350 421 - -
Glsi07g1490 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 767 979 IPR014001 -
Glsi07g1490 1329 SMART ultradead3 737 987 IPR014001 -
Glsi07g1490 1329 MobiDBLite consensus disorder prediction 310 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1490 Glsi-ChrGlsi07 32882675 32888226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1490 1140 1298 RAD5 or RAD16-like Gene Family AT5G43530 39.623 3.45e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi07g1490 SNF2_N 2.3e-19 CL0023