Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1425 ATGATCCCTACCCTATCTCACAATCTTGCTCCTTTGGAATCACTTCAACAACACCAGCCGCTTGAACATGATTCCATGATTCTCATGAATGTGTTCTTCCCAAATAACCCCACTTCAAGCCCTAACTACAACAATGGTTCGCTGGAGCAGGGTCTCATTACCCCCGGTAGTACTGTGTCTTCCGATGATCACGATGACGCCATGAACCTCACACGCGTTCCAGTGGGAGGTGGGGAAATGACCTCCATGAAACCAAACGGTAGCGTTAATCTTTATAACGGAGCAACCGCGCGTGAAATACACGCGCCGCAGAGGTGGAGAAGCTACAGGGGTGTGAGGCGTCGGCCATGGGGGAAGTTCGCTGCAGAGATTCGTGACCCCAAGAAGAACGGTTCAAGAATATGGCTGGGAACTTATGAAAGTGAGGAGGATGCAGCTTTGGCTTATGACAAAGCCGCTTTTAAGATGCGTGGCAGAAAAGCCAAGCTGAATTTTCCGCACCTCATTGGGTCCGACACACTGCCAGAGCCAGCAAGAGTAACAGTTGGTCAGAAGAGACACTCGCCGGAGGCTTCATCTCCGTCGTGGTGTACATTTGAGGATGATCGTTCACAAGGGACAAAGAAGAGAAAAAGCTTGGCTGGTCTATTGAATAAGTTAGCCAAGAATAGGAGCCAAGTCCAGGGGTTCGAAACGGGGTTAGATGCAAATACTGATCAATGA 723 0.4952 MIPTLSHNLAPLESLQQHQPLEHDSMILMNVFFPNNPTSSPNYNNGSLEQGLITPGSTVSSDDHDDAMNLTRVPVGGGEMTSMKPNGSVNLYNGATAREIHAPQRWRSYRGVRRRPWGKFAAEIRDPKKNGSRIWLGTYESEEDAALAYDKAAFKMRGRKAKLNFPHLIGSDTLPEPARVTVGQKRHSPEASSPSWCTFEDDRSQGTKKRKSLAGLLNKLAKNRSQVQGFETGLDANTDQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1425 240 PRINTS Ethylene responsive element binding protein signature 148 168 IPR001471 GO:0003700|GO:0006355
Glsi07g1425 240 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Glsi07g1425 240 SUPERFAMILY DNA-binding domain 109 167 IPR016177 GO:0003677
Glsi07g1425 240 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Glsi07g1425 240 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Glsi07g1425 240 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Glsi07g1425 240 PANTHER DNA-BINDING DOMAIN 85 207 IPR044808 GO:0003700|GO:0009873
Glsi07g1425 240 MobiDBLite consensus disorder prediction 186 201 - -
Glsi07g1425 240 MobiDBLite consensus disorder prediction 180 208 - -
Glsi07g1425 240 FunFam Ethylene-responsive transcription factor 2 107 167 - -
Glsi07g1425 240 CDD AP2 109 168 IPR001471 GO:0003700|GO:0006355
Glsi07g1425 240 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1425 Glsi-ChrGlsi07 28527154 28527876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1425 59 203 AP2-EREBP Transcription Factor Family AT2G44840 54.305 5.44e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g1425 AP2 2.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g1425 07 28527154 28527876 Glsi07g1425 07 28527154 28527876 ECH