Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1424 ATGATCCCTACCCTATCTCACAATCTTGCTCCTTTGGAATCACTTCAACAACACCAGCCGCTTGAACATGATTCCATGATTCTCATGAATGTGTTCTTCCCAAATAACCCCACTTCAAGCCCTAACTACAACAATGGTTCGCTGGAGCAGGGTCTCAATACCCCCGGTAGTACTGTGTCTTCCGATGATCACGATGACGCCATGAACCTCACACGCGTTCCAGTGGGAGGTGGGGAAATGACCTCCATGAAACCAAACGGTAGCGTTAATCTTTATAACAGGGGTGTGAGGCGTCGGCCATGGGGGAAGTTCGCAGCAGAGATTCGTGACCCCAAGAAGAACGGTTCAAGAATATGGCTGGGAACTTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGACAAAGCTGCTTTTAAGATGCGCGGCAGAAAAGCCAAGCTGAATTTTCCGCACCTCATTGGGTCCGACACACTGCCAGAGCCAGCAAGAGTAACAGTTGGTCAGAAGAGACATTCGTCGGAGGCTTCATCTCCGTCGTGGTGTACATTTGAGGATGATGGTTCAGAAGGGACAAAGAATAGAAAGAGCTTGACTGGTCTATTGAATAAGTTAGCCAAGAATAGGAGCCAAGTACAGGGGTTCGAAACGGGGTCAGATGCAAATATTGATCAATGGCGGAATCACTTGAGTTATTAA 696 0.4799 MIPTLSHNLAPLESLQQHQPLEHDSMILMNVFFPNNPTSSPNYNNGSLEQGLNTPGSTVSSDDHDDAMNLTRVPVGGGEMTSMKPNGSVNLYNRGVRRRPWGKFAAEIRDPKKNGSRIWLGTYEREEDAALAYDKAAFKMRGRKAKLNFPHLIGSDTLPEPARVTVGQKRHSSEASSPSWCTFEDDGSEGTKNRKSLTGLLNKLAKNRSQVQGFETGSDANIDQWRNHLSY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1424 231 MobiDBLite consensus disorder prediction 167 194 - -
Glsi07g1424 231 Pfam AP2 domain 94 142 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 MobiDBLite consensus disorder prediction 39 64 - -
Glsi07g1424 231 CDD AP2 94 152 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 Gene3D AP2/ERF domain 93 151 IPR036955 GO:0003700|GO:0006355
Glsi07g1424 231 MobiDBLite consensus disorder prediction 169 186 - -
Glsi07g1424 231 PANTHER DNA-BINDING DOMAIN 61 191 IPR044808 GO:0003700|GO:0009873
Glsi07g1424 231 SMART rav1_2 91 156 IPR001471 GO:0003700|GO:0006355
Glsi07g1424 231 FunFam Ethylene-responsive transcription factor 2 92 151 - -
Glsi07g1424 231 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Glsi07g1424 231 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1424 Glsi-ChrGlsi07 28524178 28524873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1424 94 176 AP2-EREBP Transcription Factor Family AT2G44840 72.289 1.52e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g1424 AP2 1.6e-12 CL0081