Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1407 ATGGGTGAGAAAGACGATGGGTTGGGGTTGAGTTTGAGTTTGGGAGGGGAAGAAAATCAGCCTTCTCTCAAGTTGAGTCTCATGCAGAAGCCTCCACAGCCTCTTACGAATCAAAGGAGTTCCTGGAATGATATTTTTCAGTTACCTGATCGGAACTCTGAGGCAAGGTCGTTTCTCCGAGGAATAGATGTGAATTTAGCCCCGTCCACGGTGGCGGATTGTGACGACGAAAATGGCGTTTCCTCGCCGAACAGCACTGTATCGAGCATCAGTGGGAAGCGGAGCGAGAGAGAGCCAGTCGGGGATGAAAACGAAGCCGAGAGGGCTTCGAGCTCTCCAGGAAGCGACGAGGAGGATGGCGGCGGGGGTGGCGGCGAAGGCGACGGCGACACTTCGAGGAAGAAGCTCAGGCTTTCAAAGGAGCAGTCAATGGTGCTGGAGGAAACCTTTAAGGAGCATAGCACCCTCAATCCGAAGCAAAAGCAGGCATTGGCAAAGCAGCTGAATCTCAGGCCCAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGAACCAAGTTGAAGCAGACTGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGAATCTAACCCAAGAGAACAGGAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTAAAATTATCTCCACAGATCTACATGCACATGAACCCTCCCACCACTCTCACAATGTGTCCTTCATGTGAGCGTGTTGCTGTCTCATCCACATCGTCCTCCTCATCAGCCACCACACCCTCCACAGTTGCTCCAGCTAATCGCAACCCTAACATCCAGCGTCCGGTGCCTGTCAACCCTTGGGCAGCAAAGTCTATCCAGCAACGGCCATTTGACAGCCCAAATCCTCGGCCATAA 900 0.5222 MGEKDDGLGLSLSLGGEENQPSLKLSLMQKPPQPLTNQRSSWNDIFQLPDRNSEARSFLRGIDVNLAPSTVADCDDENGVSSPNSTVSSISGKRSEREPVGDENEAERASSSPGSDEEDGGGGGGEGDGDTSRKKLRLSKEQSMVLEETFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTQENRRLQKEVQELRALKLSPQIYMHMNPPTTLTMCPSCERVAVSSTSSSSSATTPSTVAPANRNPNIQRPVPVNPWAAKSIQQRPFDSPNPRP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1407 299 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Glsi07g1407 299 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Glsi07g1407 299 MobiDBLite consensus disorder prediction 252 299 - -
Glsi07g1407 299 Gene3D - 124 194 - -
Glsi07g1407 299 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Glsi07g1407 299 FunFam Homeobox-leucine zipper protein 18 117 194 - -
Glsi07g1407 299 MobiDBLite consensus disorder prediction 252 275 - -
Glsi07g1407 299 Coils Coil 195 225 - -
Glsi07g1407 299 MobiDBLite consensus disorder prediction 69 134 - -
Glsi07g1407 299 CDD homeodomain 133 190 IPR001356 GO:0003677
Glsi07g1407 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 267 - -
Glsi07g1407 299 SUPERFAMILY Homeodomain-like 116 190 IPR009057 -
Glsi07g1407 299 MobiDBLite consensus disorder prediction 1 43 - -
Glsi07g1407 299 SMART HOX_1 131 193 IPR001356 GO:0003677
Glsi07g1407 299 MobiDBLite consensus disorder prediction 95 114 - -
Glsi07g1407 299 MobiDBLite consensus disorder prediction 15 43 - -
Glsi07g1407 299 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Glsi07g1407 299 MobiDBLite consensus disorder prediction 75 93 - -
Glsi07g1407 299 Pfam HD-ZIP protein N terminus 1 98 IPR006712 GO:0005634
Glsi07g1407 299 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1407 Glsi-ChrGlsi07 27869020 27871293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1407 32 291 Homeobox Transcription Factor Family AT3G60390 66.545 1.95e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi07g1407 HD-ZIP_N 3.4e-32 No_clan