Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1346 ATGTTTGGTCGTGCACCAAGGAGGAGCAATAACACCAAATATTACGATACACTTGGTGTTTCAAAAAATGCAAGTCAAGATGAACTCAAGAAGGCTTATAGAAAGGCTGCAATTAAGAACCATCCTGACAAAGGTGGAGATCCTGAGAAGTTCAAGGAGTTAGCTCAAGCTTATGAAGTGCTCAGTGATCCTGAAAAGAGAGAACTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAGGGAATGGGGGGAGGAGGTGGCCCATTTCATAATCCATTTGATATATTTGAATCATTTTTTGGGGGAGGAGCCTTCAGTGCCGGTGGTAGTTCACGAGGAAGAAGGCAAAAACATGGGGAAGATGTGGTGCATACTTTGAAGGTTTCTTTGGAGGACCTGTACAATGGCACCACAAAGAAACTGTCTCTTTCTAGAAATGTATTTTGCCCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACATCAGGAAGATGTTATGGATGCCAAGGCACAGGCATGAAGGTTACAACAAGGCAGATAGGACTGGGCATGATTCAACAAATGCAACATGTCTGTCCTGAATGCAGAGGAACTGGTGAGGTCATTAATGAGAGAGATAGATGCCTTCAGTGCAAGGGGAACAAGGTGACCCAGGAAAAGAAGGTGCTGGAGGTGAGTGTTGAGAAGGGGATGCAGAAGGGTCAGAAGATTGTGTTAGAAGGACAAGCTGATGAAGCTCCAGACACAATTACCGGAGACATTGTATTTGTCCTACAAGTAAAGGAGCACCCGAAGTTCAAGAGGAAGCAGGATGATCTCTATGTTGAGCATAATCTTAGTTTAACTGAGGCACTTTGTGGTTTCCAGTTTGTCATTACTCATCTGGATGGGAGGCAACTCCTGATCAAGTCAAACCCAGGGGAAGTCATTAAGCCAGGTCAATATAAAGCGATAAATGATGAGGGAATGCCACATTATAACAGGCCCTTCATGAGGGGCCGCCTGTACATCCAATTTAATGTTGATTTCCCAGAGTCAGGTTTTCTTACTCCTGACCAATGCCGGTTAATAGAAACTGTATTACCTCGGAAGACAAGTAGGCAATTGACAGATATGGAGCTGGATGATTGTGAGGAGACCACTTTGCATGATGTCAACATTGAGGAGGAGATGAAACGGAAACAGCAACAACAATACCAAGAGGCATATGACGAAGATGATGAGGAGCCATCTATGCCACGAGTGCAATGTGCTCAACAGTAA 1263 0.4394 MFGRAPRRSNNTKYYDTLGVSKNASQDELKKAYRKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKRELYDQYGEDALKEGMGGGGGPFHNPFDIFESFFGGGAFSAGGSSRGRRQKHGEDVVHTLKVSLEDLYNGTTKKLSLSRNVFCPKCKGKGSKSGTSGRCYGCQGTGMKVTTRQIGLGMIQQMQHVCPECRGTGEVINERDRCLQCKGNKVTQEKKVLEVSVEKGMQKGQKIVLEGQADEAPDTITGDIVFVLQVKEHPKFKRKQDDLYVEHNLSLTEALCGFQFVITHLDGRQLLIKSNPGEVIKPGQYKAINDEGMPHYNRPFMRGRLYIQFNVDFPESGFLTPDQCRLIETVLPRKTSRQLTDMELDDCEETTLHDVNIEEEMKRKQQQQYQEAYDEDDEEPSMPRVQCAQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1346 420 Gene3D DnaJ domain 10 110 IPR036869 -
Glsi07g1346 420 CDD DnaJ 14 63 IPR001623 -
Glsi07g1346 420 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Glsi07g1346 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 349 IPR008971 GO:0006457|GO:0051082
Glsi07g1346 420 FunFam DnaJ subfamily A member 2 149 215 - -
Glsi07g1346 420 MobiDBLite consensus disorder prediction 386 401 - -
Glsi07g1346 420 FunFam DnaJ subfamily A member 2 263 345 - -
Glsi07g1346 420 Gene3D - 149 215 - -
Glsi07g1346 420 SUPERFAMILY Chaperone J-domain 8 108 IPR036869 -
Glsi07g1346 420 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Glsi07g1346 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Glsi07g1346 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Glsi07g1346 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Glsi07g1346 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
Glsi07g1346 420 FunFam dnaJ protein homolog 10 111 - -
Glsi07g1346 420 Pfam DnaJ domain 13 71 IPR001623 -
Glsi07g1346 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 408 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi07g1346 420 CDD DnaJ_C 120 346 - -
Glsi07g1346 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 11 402 IPR044713 GO:0006457|GO:0030544
Glsi07g1346 420 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Glsi07g1346 420 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Glsi07g1346 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Glsi07g1346 420 SMART dnaj_3 12 66 IPR001623 -
Glsi07g1346 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Glsi07g1346 420 Coils Coil 385 405 - -
Glsi07g1346 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Glsi07g1346 420 MobiDBLite consensus disorder prediction 386 420 - -
Glsi07g1346 420 Gene3D - 263 345 - -
Glsi07g1346 420 Gene3D - 111 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1346 Glsi-ChrGlsi07 24030413 24033558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1346 8 73 C2H2 Transcription Factor Family AT1G74250 44.000 5.64e-11 62.4