Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1344 ATGGGGAGCATGGGTGAACCAGATAGAAAACGGCGTCACTTTAACTCCTTGTCCCCTACTGCTGCAGCCGCCACTGCCAAGAAGCTACCCTTCTTGCCCATTTCCGAAGACAAAAAGCTTGATATTACCGTTCTTCAGTTTCAAAATCAAAAGCTTACACAGAAATTAGAAACTCAGAAGGTAGAATATACTGCTCTTGATAATAAGTTTTCTCAACTGAAGGAGAGGCAACATTCATATGATTCCACATTAACAGTGGTCAAGAAGTCTTGGGAACAGCTAATTGATGATTTGGAGTCATGTTCTGCTCACACAAGAGAGTCTAGTGGCGGCAACTTGGATTCAAAATTTACATCAGTTACGGGAGTTGGAAGTCCATCCACTGTTGAGGACGTTTTCCTTAGCCGACTTTTGCAAACTGGTGCAACAGAAAGTTGCTCCACATATGATTGTGCTAGCCAGATGGAAGAGCAGACACAAGTTATTATTGAAAAAGCTAAGGGCGTTCTGCAAAATATAGTGACAACTATTAATAACCTTTGGTGTCTGAAGGATGGATTGCATAATTCATTATTAACAAAACTGCCAGGAGATGGTTTGTGCGGCCAGAAGTCCTCCATTGATTTAAAGTTGGAAGTTAAAAGTTTGAGATCAGCTTTCAGTGAACTTCATTTGACGCACAAGTCTTTAGCTAGTGAGTTCCAAAGTCATCGAGATGTTGATGCCAAAAGAAAAGCTGAGCTAAAAAGACTGAAGGGGGAACTCGAAAGCACTGTTGCAGAATTAGAAGAAAGTAATCACAAACTGGCTACTCTTAAGACAGAGAGAGATGCAGCAAAAGGGGCAGTTTTCCCCGTCTTAAATGTTGGAAGCAAGCATGTTGCTAGTGATAAGATCAAAGATAAACAAAAGGATTTGCAAGACATGGAATCTTCCTTGAAGGAGCTATTGGACCAAGGATCATCTCGACTAGTGGAACTTAAAAAACTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATTTACAGAACACTGTGAAGAATTTGAAGTGTATTACTTCTTCCCGTGCATTCCAATTGGCAAGAGATCAGATAGAAAAGTCAAAGTTAGAAGTTCATGAGTATCAGACCTTATTTGAGAAACTACAGGTTGAGAAGGATAACCTTGTATGGAGGGAGAGGGAGTGGTACATAAAAAGTGATTTAGTAGATGTTTTTCAAAGATCTATGGCAGTTGCTGATTCTAGAGTTGCTGATTTAGGGACTGAAATAAAGAAAAAAATTGAGGAAAGAAAAGTGATTGAAAACAAGCTAGAAGAGACAGAAAGGGAACCAGGAAGGAAACAAATTATTGCAGAATTTAGATCCCTGGTTTCTTCATTTCCTGAAGAAATGGGATCTATGCAAAATCAATTAAGTAAGTATAAAGAAGCTGCTTCAGACATCCATTCTCTGCGTGCAGATGTACAGTCTCTGTCTATTATTCTTGAGATGAAGGCAAAAGAATGTGACGTTTTATCAATTAGATCTGCTGATCAACTTGCTGAGATACAGAGGCTGCTTGCTGTGGTTCAAGATTTGAGAGAAAGTGAGCTAGAGTTGAGGTTGATTTTGGAAATGTATAGACGTGAGTCCATTGATTCAAGGGATGTTGTGGAAGCACGGGATTCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCTTCTCTTGATGAGCACAACTTAGAACTTCGAGTTAAGACGGCAAATGAAGCAGAGGCTAGATCTCAACAGAGGCTTGCTACTGCTGAAGCTGAGATAGTGGACCTGAGACAGAAACTCGAAGCTTCTAAAAGGAAGAAGTGTAAACTGTCTGATGTCTTGAAATCTAAAAACGAGGAAAATGAGGCCTATTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACTCAAAACCAACATCTATTGCAGCAGATTACTGAGAGAGATGACTACAATATCAAGCTTGTCTTAGAGGGTGTAAGGGCAAAACAAAAGCAGGATTCTCTGGCCATGGAGAGGCGGGCTATGGAACGAGAGATCCAGCAAGCAAATGCATCTCTTAATTTTTATGACATGAAAGCTGCCAGAATTGAAGACCAGGTATTAAAATTCTGTTCAGACCAGTGTCAGAGACTTGCAGAGGATAAGCTTCAAAGTTCTGCCATTTTGGAAAATACACAAAGGAGGTTGTTGGATGTCAGAAGATCATCTCAACAAGCCCGAGATACAGTGGAGGAAGTGCAATCTAAAGTTCGTATTAGTCGAGTAACTTGTATGGAGTTACAAGTGGACCTTGAGAGAGAAAGGTTTTCCAGGAAAAGAATAGAGGAGGAGCTGGAGGTTGCTAGGAGAAAGTTTTCATATCTTCGGGCACAGACTGAGGGCTCCTCAGTTATTGAAAAGCTTCAACAGGAACTGGGAGAGTACAGGGAAATTGTCAAGTGCAGTATCTGCCAAGAGAGGACAAAAGAGGTTGTAATTACAAAATGCTACCACTTGCTCTGCAATCCATGTATCCAGAAAGTTATGGAGAGTAGGCACCGCAAATGTCCACTGTGTGCTGCAAGCTTTGGGCCTAATGATGTTAAGCCCATTTATCTGTAA 2649 0.4043 MGSMGEPDRKRRHFNSLSPTAAAATAKKLPFLPISEDKKLDITVLQFQNQKLTQKLETQKVEYTALDNKFSQLKERQHSYDSTLTVVKKSWEQLIDDLESCSAHTRESSGGNLDSKFTSVTGVGSPSTVEDVFLSRLLQTGATESCSTYDCASQMEEQTQVIIEKAKGVLQNIVTTINNLWCLKDGLHNSLLTKLPGDGLCGQKSSIDLKLEVKSLRSAFSELHLTHKSLASEFQSHRDVDAKRKAELKRLKGELESTVAELEESNHKLATLKTERDAAKGAVFPVLNVGSKHVASDKIKDKQKDLQDMESSLKELLDQGSSRLVELKKLHEERIRILQQLCDLQNTVKNLKCITSSRAFQLARDQIEKSKLEVHEYQTLFEKLQVEKDNLVWREREWYIKSDLVDVFQRSMAVADSRVADLGTEIKKKIEERKVIENKLEETEREPGRKQIIAEFRSLVSSFPEEMGSMQNQLSKYKEAASDIHSLRADVQSLSIILEMKAKECDVLSIRSADQLAEIQRLLAVVQDLRESELELRLILEMYRRESIDSRDVVEARDSEYRAWAHVQSLKSSLDEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKLEASKRKKCKLSDVLKSKNEENEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRAKQKQDSLAMERRAMEREIQQANASLNFYDMKAARIEDQVLKFCSDQCQRLAEDKLQSSAILENTQRRLLDVRRSSQQARDTVEEVQSKVRISRVTCMELQVDLERERFSRKRIEEELEVARRKFSYLRAQTEGSSVIEKLQQELGEYREIVKCSICQERTKEVVITKCYHLLCNPCIQKVMESRHRKCPLCAASFGPNDVKPIYL 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1344 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 882 IPR013083 -
Glsi07g1344 882 Coils Coil 780 807 - -
Glsi07g1344 882 Coils Coil 583 617 - -
Glsi07g1344 882 SUPERFAMILY RING/U-box 822 881 - -
Glsi07g1344 882 Coils Coil 367 387 - -
Glsi07g1344 882 SMART ring_2 830 868 IPR001841 -
Glsi07g1344 882 CDD RING-HC_Bre1-like 823 880 - -
Glsi07g1344 882 Pfam Zinc finger, C3HC4 type (RING finger) 828 870 - -
Glsi07g1344 882 Coils Coil 299 319 - -
Glsi07g1344 882 Coils Coil 426 446 - -
Glsi07g1344 882 ProSiteProfiles Zinc finger RING-type profile. 830 868 IPR001841 -
Glsi07g1344 882 PANTHER RING FINGER PROTEIN-RELATED 1 882 IPR013956 GO:0004842|GO:0010390
Glsi07g1344 882 Coils Coil 681 715 - -
Glsi07g1344 882 Coils Coil 49 76 - -
Glsi07g1344 882 Coils Coil 245 282 - -
Glsi07g1344 882 ProSitePatterns Zinc finger RING-type signature. 845 854 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1344 Glsi-ChrGlsi07 23876678 23903973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1344 810 881 C3H Transcription Factor Family AT3G58030 32.895 1.12e-07 53.5