Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1338 ATGAATATGAATTACCGGCAGAGGCTCCAAGCAGCTGCGAAAATTATACTCGATCATGACGCACGCGCTGACGACGTGCCGCTTAACCCCGATGAGCTTGGGATTAAAGCGACCCTCAAACCCCACCAAGTGGAGGGAGTTTCGTGGCTCATACGAAGATATAAACTCGGCGTCAACGTTGTCCTAGTGGTTTTATGTCCTCTAAGTGTAACAGATGGTTGGGTTTCAGAAATAGTTAAATTTTCCCCCAAACTAGAAGTATTCAAATATGTTGGTGAAAAAGAATACAGGCGCAGCCTACGCATGAAAATTCATGAGCATGTGAAAGGACAGTCATCAGTAGTCAATGTCTTGTTACCTTTTGACGTGCTGTTAACAACGTATGACATTGCATTGATGGATCAGGATTTTCTTTCTCAAATACCGTGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAGAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGAGTGCTATGTCATGCCAAGACGGTTGTTGATGACTGGCACACCTATTCAAAACAATCTTTCTGAACTGTGGGCATTGATGCATTTTTGTATGCCTTCTGTCTTTGGTACACTTGAACAGTTCCTTTCCACATTCAAGGATATCAGTGATCCTACATCAGTTCAATATGCAGTAAAAGTAAAGGATCGACTTAAACTTCTGAAATGTATATTGGGAGCCTTTATGCTTCGACGAACCAAATCAAAGCTTATTGAGTGTGGAAGTCTAGTGCTACCACCCCTCACTCAGATAACTGTGATGGCACCCCTTGTCAGCCTGCAGAAAAAGGTCTACATGTCTATATTGAGGAAGGAGCTTCCTAAGTTACTTGCGCTATCTTCTGGAACTTCAAATCATCCGTCCCTACAGAATATTGTTATACAGCTAAGGAAAGCATGCAGCCATCCTTATCTCTTTCCCGGTATTGAACCTGAACCTTATGAAGAGGGTGAACATCTAGTTCAGGCCAGTGGTAAACTGCTGATTTTGGACCAACTTCTTCAGAAGCTACATTATTCTGGACACCGTGTCCTTCTTTTTGCTCAAATGACCCAAACACTTGACATTTTGCAGGACTTTATGGAGTTACGAAAATATTCATATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCTGTCAGCTGATTCGGGTCTGAATTCTGAAGCTGACCAAAATGAAGCCTTTGTCTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAACCCTCAAGTGGACATGCAGGCTTTGCAGCGAGCCCATCGTATTGGCCAAATGAATCACGTGTTGTGTATAAACCTTGTAACAGAATGTACAGTGGAGGAGGTAATTATGCGGAGGGCAGAGAGGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCTGGAACATGAAGCTGAAGAAACGTCAGGAGTTGGAACTAATGATTTGAAATCTATCATTTTTGGTTTACATATGCTTGATCCCACTGAGATCAATGATGGAAAATTTGGGGACATGAATTTGTCAGAAATAAATGCTATGACTGACAAGGTGATTGCAATGCGTGATATTCAAATATCTGACAAGGATGACAGGAAATTTGAGGTCAACCCTAGAAATCTTCTAAAAACATATGATGCTAAGGAAGGAGGACCTGCTTCTCTTTCATGTGATCCTGATCTTGATGAGGCTTCATATCTATCCTGGGTTAAAAAATTCGAGGAAGTGTCAAAATTAAGTGATGACTCAGTTATGGAGTTGAGGAACAGAAGAATCTTAGATGAGGAAAAGCATCTAAAACTTGAGGTTGCAAAGAAAAAGGCGGAGGAAAAGAAGCTGTCTAAGTGGGAAGCCCTTGGCTACCATTCATTGAAGGTGAATGACCCTATCAGCCCACCCGATGGTGATATTATATCAGATGCTGGATCTGTTCATTTTGTTTATGGAGATTGTACAGATCCATCTAGCGTTTGTCCATCTGAACCTGCTATAATATTCAGCTGTGTTGATACCTCTGGACACTGGGGCCATGGAGGAATGTTTAATGCTCTTACCAAACTTTCTTCAAGCATTGGTGGTGCATATGAACGGGCTTCTGCACATGGGGATTTGCATCTTGGTGATCTTCATCTTATAAGGCTTGAAGATGACCGTGACAAACAAAATATGGATAGCAGTACTCCTAAGTGGGTTGCTTTAGCTGTGGTTCAGTCATATAATCCAAGGCGTCAAGATTCTCGCGGCAGGATCTCACTTCTCCACTTGGAAAGTTGCTTATCAAAGGCAGCATTCTCAGCCTCTCAAAATTCCGCATCAATCCACATGCCCCATATAGGTTATCAAGATGGATCAGATCGTTCTGAGTGGTACACCATAGAACGTCTTCTACGAAAATATGCTTCCATTTACAGCATCAAGATATTTGTGCATCTAGACATCGCAGTTGATATTGGAAGATTGAAAGCTGGATTAGCATGTGGTGGTGTGTGCAAATTCAGGAAATTTTTTAGCCTGCTGACAGTCTTCAAATTTGGTATGCAAATCTGGATGGACCTGATGGCTCTATCCTTGGACCATCTGAGCTTCTTTCGCATGGAGGTTAAAATTATACCTGTCTTTTGCAACCTTCTTCATGCCCATCTTGTTGGAAAAGAGGCCCCTCTTCCAAACATCAGTAGCAACACAGTTGAAGAAGATCTCTTCTCTTCTTTTCCTTAA 2820 0.4174 MNMNYRQRLQAAAKIILDHDARADDVPLNPDELGIKATLKPHQVEGVSWLIRRYKLGVNVVLVVLCPLSVTDGWVSEIVKFSPKLEVFKYVGEKEYRRSLRMKIHEHVKGQSSVVNVLLPFDVLLTTYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKECYVMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLEQFLSTFKDISDPTSVQYAVKVKDRLKLLKCILGAFMLRRTKSKLIECGSLVLPPLTQITVMAPLVSLQKKVYMSILRKELPKLLALSSGTSNHPSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFMELRKYSYERLDGSIRAEERFAAIRSFSGLSADSGLNSEADQNEAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDMQALQRAHRIGQMNHVLCINLVTECTVEEVIMRRAERKLQLSLNVIGDNILEHEAEETSGVGTNDLKSIIFGLHMLDPTEINDGKFGDMNLSEINAMTDKVIAMRDIQISDKDDRKFEVNPRNLLKTYDAKEGGPASLSCDPDLDEASYLSWVKKFEEVSKLSDDSVMELRNRRILDEEKHLKLEVAKKKAEEKKLSKWEALGYHSLKVNDPISPPDGDIISDAGSVHFVYGDCTDPSSVCPSEPAIIFSCVDTSGHWGHGGMFNALTKLSSSIGGAYERASAHGDLHLGDLHLIRLEDDRDKQNMDSSTPKWVALAVVQSYNPRRQDSRGRISLLHLESCLSKAAFSASQNSASIHMPHIGYQDGSDRSEWYTIERLLRKYASIYSIKIFVHLDIAVDIGRLKAGLACGGVCKFRKFFSLLTVFKFGMQIWMDLMALSLDHLSFFRMEVKIIPVFCNLLHAHLVGKEAPLPNISSNTVEEDLFSSFP 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1338 939 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 63 582 IPR031053 GO:0003678|GO:0006281|GO:0006338
Glsi07g1338 939 Gene3D - 60 254 IPR038718 -
Glsi07g1338 939 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 518 IPR001650 -
Glsi07g1338 939 FunFam Putative helicase CHR10 255 566 - -
Glsi07g1338 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 509 IPR027417 -
Glsi07g1338 939 SMART helicmild6 367 462 IPR001650 -
Glsi07g1338 939 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 199 IPR014001 -
Glsi07g1338 939 Pfam Helicase conserved C-terminal domain 338 462 IPR001650 -
Glsi07g1338 939 Pfam SNF2-related domain 62 317 IPR000330 GO:0005524|GO:0140658
Glsi07g1338 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 244 IPR027417 -
Glsi07g1338 939 SMART ultradead3 35 207 IPR014001 -
Glsi07g1338 939 Gene3D Leucine Aminopeptidase, subunit E, domain 1 674 845 IPR043472 -
Glsi07g1338 939 SUPERFAMILY Macro domain-like 678 844 IPR043472 -
Glsi07g1338 939 Gene3D - 256 559 IPR027417 -
Glsi07g1338 939 CDD SF2_C_SNF 330 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1338 Glsi-ChrGlsi07 23741015 23766484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1338 31 521 RAD5 or RAD16-like Gene Family AT1G02670 24.437 5.25e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi07g1338 SNF2_N 1.7e-38 CL0023