Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1333 ATGTTGGACTACGAATGGGGGAACCCGTCAACGATAGTGCTCACCGGCAACGAGGAAACCGAGGCGGCAGACTCCGGCCAAATCCACCGTCAAATCTTCGACCACTACGCTCCCAATTCCTTATTAACGGAACACCTCCTTCATCAACAGCAACACGGGCCCACACCCACCACTACCACCGCTGATTTTTCTCACTACCACTTTAATTCCCAAGCCCACCACCACATCCACCACTCCTTCTTCGACCCACGCGCCTTACCCGGCGCGTCCTCCTCCTACGCTCCGCCACCACCTCCTCCCATGCTCTCTCTCGAGCCGTTCCCAGCTGTCAACGCCACCAACTGTGGACCTGGGGTTCTGGTCGTACCCAAGTCCGAGGATGTCGGTCGGCCCATGGACTTCTCGGCGTCTAGAATTGGGCTCAACCTGGGTGGCCGTACGTACTTCTCATCGTCCGAGGATGATTTCGTTAGTCGGCTCTACCGTCGCTCCAGGCCGGCCGAACCGGGTACGACCTTGTCGAACTCGCCCCGGTGCCAAGCAGAGGGCTGCAATGCCGATCTCTCGCACGCGAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAGGCAGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGGTTCCATCTTCTTTCGGAGTTTGATAATGGAAAACGAAGCTGCAGGAAGAGACTGGCAGATCATAATCGCCGCAGAAGAAAAACTCAGCAGCCAAATCAAGAAATCCTGAAATCCCAGCTCGAAAATGCCCGAAATTCTACTTTTGACTGTGTTTCAAGGTCCCCACCAGATTCTGGGGCTCAGGGGATGTCGTCGGTGACGGTGGCAGTGTCACCGCCGGATTATTTCCGGCAGCAGAGGGCACATCAAATTACTACTGGTTCATCAGCAACATCAAACTCACTGTTCTTCTCAAGCGGGTAG 978 0.5613 MLDYEWGNPSTIVLTGNEETEAADSGQIHRQIFDHYAPNSLLTEHLLHQQQHGPTPTTTTADFSHYHFNSQAHHHIHHSFFDPRALPGASSSYAPPPPPPMLSLEPFPAVNATNCGPGVLVVPKSEDVGRPMDFSASRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAEPGTTLSNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKSQLENARNSTFDCVSRSPPDSGAQGMSSVTVAVSPPDYFRQQRAHQITTGSSATSNSLFFSSG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1333 325 SUPERFAMILY SBT domain 177 256 IPR036893 GO:0003677|GO:0005634
Glsi07g1333 325 Gene3D - 171 240 IPR036893 GO:0003677|GO:0005634
Glsi07g1333 325 FunFam Squamosa promoter-binding-like protein 14 170 240 - -
Glsi07g1333 325 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Glsi07g1333 325 Pfam SBP domain 179 252 IPR004333 GO:0003677
Glsi07g1333 325 MobiDBLite consensus disorder prediction 271 290 - -
Glsi07g1333 325 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 85 291 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1333 Glsi-ChrGlsi07 23601408 23603551 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1333 1 226 SBP-box Gene Family AT1G02065 48.548 4.39e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi07g1333 SBP 9e-31 No_clan