Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1332 ATGGACTTTGGAATTGGAGGGAACTTGTTCTCTCTGGGCAACGATAGCAGAGAGGAAAACAGTAATAGTAATAATCCCTCTTTCGCCTGGGATTCCTGGAAGTGCACTACTTCAAGTTCAACCAATTCTAGGCTCATTAAAACATTATACGCCACTGCGCCGCCGGAGACCGCCGCCGCTAACCCCCGCCAGGAGGAGGTCAGTTTAGCAAACGCCCTCATGTTTAATCTTCCTCAAGTTAGTCCTACTCGTGACGCCGGTGACTACCCCCTACAGCGGCAGCATCCTCAGTACGCCGGCGATGGGTCCCTTGTGCATCCGGACCCACATCTCACGTGCCTGAAGCTGGGCAAGAGGCATTACTTTGAAGATGCTATTGGAAGCAGTAGCGGTGGTGGGGGCGATGAGTTGTTCTTTGGGGGTAAGAGGGGCAAAGCCTACTACGGAAGTAGTAGCGGTGGCGGCGGTAGTTTAAAGACGGCGGTGGTGGTGCCTCGGTGTCAGGTGGAGGGGTGTCACGTGGCGCTGTTGAACGCGAAGGAGTACCACCGGAGGCACAAGGTTTGTGAGATGCATTCTAAGGCACCCCAGGTTTTGGTGTTAGGGTTGGAGCAGAGATTCTGTCAGCAGTGCAGCAGGTTTCATGTGCTGTCAGAGTTCGATGATTCAAAGAGAAGTTGTAGGAGGAGGCTGGCTGGCCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCTAGGGATTCTTATCAAGATTTGTGGGAAGAGCATAGCAGAGTAAAAAGTGGTAGAAAATCTCAACTAATGGAACTCTTGTTCTGTAGGAAGTTTCTGTTTCTAACTATGACTTTCACAAAGTATTCTCGTGTTCTGTTTTTCATCTGCCCAGACAACAAAATGGTAGGAGGAGGGATTGCATACACATCATCAGCAGAATGTGCTCTCTCTCTTCTGTCAGCCAAGAGTGGTTATTCTTGGCTTGCTCCTGCTCATGATCTCTCCTCAAGATGCAGTGCTGCCCTACGCGAATTGATAGTTGAAAACCGTGCTGCCATCATGGCTAGCCGGCAGCTTGGTTTTGACAGAGATTTGTATTTTTCACACCACCACGCTGTGGAGGAGTTTAAGCAGATGCAACCTGCAGCCGAGTCCCATTATTTCCCTCAACAAAACCAGCATCATATGTAA 1191 0.4971 MDFGIGGNLFSLGNDSREENSNSNNPSFAWDSWKCTTSSSTNSRLIKTLYATAPPETAAANPRQEEVSLANALMFNLPQVSPTRDAGDYPLQRQHPQYAGDGSLVHPDPHLTCLKLGKRHYFEDAIGSSSGGGGDELFFGGKRGKAYYGSSSGGGGSLKTAVVVPRCQVEGCHVALLNAKEYHRRHKVCEMHSKAPQVLVLGLEQRFCQQCSRFHVLSEFDDSKRSCRRRLAGHNERRRKSSHDSVARDSYQDLWEEHSRVKSGRKSQLMELLFCRKFLFLTMTFTKYSRVLFFICPDNKMVGGGIAYTSSAECALSLLSAKSGYSWLAPAHDLSSRCSAALRELIVENRAAIMASRQLGFDRDLYFSHHHAVEEFKQMQPAAESHYFPQQNQHHM 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1332 396 Pfam SBP domain 167 240 IPR004333 GO:0003677
Glsi07g1332 396 ProSiteProfiles Zinc finger SBP-type profile. 164 241 IPR004333 GO:0003677
Glsi07g1332 396 SUPERFAMILY SBT domain 165 246 IPR036893 GO:0003677|GO:0005634
Glsi07g1332 396 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 243 IPR044817 GO:0003677
Glsi07g1332 396 Gene3D - 160 228 IPR036893 GO:0003677|GO:0005634
Glsi07g1332 396 FunFam Squamosa promoter-binding-like protein 14 158 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1332 Glsi-ChrGlsi07 23455932 23460821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1332 167 244 SBP-box Gene Family AT2G33810 71.795 7.23e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi07g1332 SBP 6.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g1332 07 23455932 23460821 Glsi07g1332 07 23455932 23460821 ECH