Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1325 ATGGACGTGTACGTTTCAGACTGCTTCCGCATTGATGACCTTCTAGACTTCTCCAACAAAGACCTCACCTCCTCGTCTTCCTCCACCGATTCCCACCACCATCATCATCAGCTCCCTCCGACGCAAAACCCATTCCATCACCACCATTACCAATCCTCCTCCAACACCTTCAGTAACTTCCCGTGCGCCCCCTCCACCGAATTCACCGCCGATCTTTGCGTCCCCAGCGATGACGTAGCGGAGCTAGAATGGCTCTCGCAATTCGTAGATGACAGCTTCCACGAATTTCCAGCGAACGAGATGCTGGGTTCCTCTCTCCAATCCGGCACGTCGTTTCCGAGCGAAGCTAGCAGCAAGCGTTCGAGATTACCCGTTTCCAAAGCTCCGGTCACAGGGAAACCGAGAGCCAAAACGGCAGCGAACCGAGGGTCCTCATCGTCGGAAGAGGGAGGGGTGCGGAGATGCACCCACTGCGCATCCGAGAAAACACCGCAGTGGCGAACAGGACCGCTGGGACCCAAGACACTATGCAACGCGTGCGGGGTGAGGTACAAGTCGGGTCGGCTCGTACCCGAGTATCGACCCGCATCAAGTCCGACGTTCGTGCTGACTCAGCACTCGAACTCGCACCGGAAGGTCCTCGAGCTCCGTCGGCAGAAGGAACTGATGAAGCAGCAGCAGCTACAGCAACAAGAAGAGCAATGCTACCGTCACCAGCACGACTTCGAAGTCTGCTGA 738 0.5691 MDVYVSDCFRIDDLLDFSNKDLTSSSSSTDSHHHHHQLPPTQNPFHHHHYQSSSNTFSNFPCAPSTEFTADLCVPSDDVAELEWLSQFVDDSFHEFPANEMLGSSLQSGTSFPSEASSKRSRLPVSKAPVTGKPRAKTAANRGSSSSEEGGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRKVLELRRQKELMKQQQLQQQEEQCYRHQHDFEVC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1325 245 MobiDBLite consensus disorder prediction 104 154 - -
Glsi07g1325 245 Pfam GATA zinc finger 155 188 IPR000679 GO:0006355|GO:0043565
Glsi07g1325 245 CDD ZnF_GATA 154 201 IPR000679 GO:0006355|GO:0043565
Glsi07g1325 245 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 213 - -
Glsi07g1325 245 PANTHER GATA TRANSCRIPTION FACTOR 112 227 - -
Glsi07g1325 245 PIRSF Txn_fac_GATA_plant 2 243 IPR016679 GO:0003677|GO:0005634|GO:0045893
Glsi07g1325 245 ProSiteProfiles GATA-type zinc finger domain profile. 153 185 IPR000679 GO:0006355|GO:0043565
Glsi07g1325 245 MobiDBLite consensus disorder prediction 104 121 - -
Glsi07g1325 245 FunFam GATA transcription factor 145 232 - -
Glsi07g1325 245 SMART GATA_3 149 199 IPR000679 GO:0006355|GO:0043565
Glsi07g1325 245 MobiDBLite consensus disorder prediction 25 52 - -
Glsi07g1325 245 Coils Coil 213 233 - -
Glsi07g1325 245 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355|GO:0043565
Glsi07g1325 245 Gene3D - 152 200 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1325 Glsi-ChrGlsi07 23140244 23141232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1325 38 229 C2C2-Gata Transcription Factor Family AT2G45050 57.965 4.81e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi07g1325 GATA 1.6e-15 CL0167