Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1293 ATGAGCCAGTGTGTTCCGAGCTGGGATGTGGATGACAATCAAACAGGCCCCAGAGTCTCTCTTCGTTCTAACTCCAATTCCGCTGCCCCTGATGTCCCCATGTTAGACTCTGAAGTTGCGGAGCTTACATGGCAGAATGGGCAGATATCCATGAACGGCTTTGGTCTGCCGCGATTTCCGGAAAAACCCATCATCGCCGCCGCCACAAACACCAGGCCCGTCCCCTCCATGTACACATGTGAGAAGCTTCCTCGTGCAAGTGGCACCTTAGAGTCCATAGTCAACCAAGTCAATTGCTTGCCCCACCGGAACAAATCCATATCCGACGGTGGTGACGGAGACGATTTAGTGCCATGGTTTGAACCTCACCGAGCTGCAGCAGTCGCCCCTTCAAACACAATGACTATGGACGCCTTAGTGCCTTGCTCGAATCGTACGGAAGAGCAGGGTACGCAGGTTGTGGACTGTATGGCTGGAGGGATCGGCACGTGCAAGTTGGGTTGCTCGACACGTGTGGGATCTTGTGATGGGGCCGCCCAAGACGGGGAAGCCCTCCACGCTTTGAAACGCACCGAGGTGGCGCGTGTGCCTGTAACACATGACTGGAGTAGCAGGGATCATAGTGGTGAGAGTGGGAGAGGTAGCCATCACGTGACCCTCGACACGCGCGATAGGGAATTGGATGATGGGGGTTATATTTCTACCTCAATGGGTTCGCCGGAAAACACCAGCTCCGCCAAGCAGTTTGCAGAGACCACCGCCACCGCCTCGGAGGACCATGATTCTGTTTGCTATAGTATATCACAGGGAGAGGCAAGTGACAAGAAGAACAAGAAGAGAAGAACAGTGAAATCGTCAATGTCCACCAAAGGGAGTAGAACTGCTGCTGTACATAATCAATCTGAAAGGAAAAGGAGAGACAAGATAAACCAAAGAATGAAGACACTGCAAAAGCTGGTCCCCAATTCCAGTAAGACTGATAAAGCTTCAATTCTGGATGAGGTGATAGAATATCTGAAGCAGCTGCAAGCGCAAGTGCAAATGATGAGTAGAATGAGCATGCCCTCCATGATGCTGCCAATGACCATGCAACAACAACTTCAAATGTCCATGATGGCTCCAATGGGAATGGGATTGGGTATGGGCATGGGCATGGGCATGGGTCTGGGTATGGGTGTGGATATGAACAACATGGCTCGCCCTAACATCCCAACCATCCCTCCCATCCTCCACCCTATTACTGCCTTCATGCCTATGGCCTCGTGGGATGCCTCAGGTAGTGGTAATCGACTGCAAGGGCCTCCGGCAACCATAATGCCTGACCCCTTGTCCACATTTCTAGCATGCCAGTCACAGCCCATGACTATGGATGCATACAGTAGGATAGCTGCCATGTATCAGCAGCTGCAACAAGCTCCCGCATTCTCCAAGAGTTGA 1437 0.5205 MSQCVPSWDVDDNQTGPRVSLRSNSNSAAPDVPMLDSEVAELTWQNGQISMNGFGLPRFPEKPIIAAATNTRPVPSMYTCEKLPRASGTLESIVNQVNCLPHRNKSISDGGDGDDLVPWFEPHRAAAVAPSNTMTMDALVPCSNRTEEQGTQVVDCMAGGIGTCKLGCSTRVGSCDGAAQDGEALHALKRTEVARVPVTHDWSSRDHSGESGRGSHHVTLDTRDRELDDGGYISTSMGSPENTSSAKQFAETTATASEDHDSVCYSISQGEASDKKNKKRRTVKSSMSTKGSRTAAVHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASILDEVIEYLKQLQAQVQMMSRMSMPSMMLPMTMQQQLQMSMMAPMGMGLGMGMGMGMGLGMGVDMNNMARPNIPTIPPILHPITAFMPMASWDASGSGNRLQGPPATIMPDPLSTFLACQSQPMTMDAYSRIAAMYQQLQQAPAFSKS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1293 478 MobiDBLite consensus disorder prediction 200 230 - -
Glsi07g1293 478 CDD bHLH_AtPIF_like 293 347 IPR047265 -
Glsi07g1293 478 Coils Coil 299 319 - -
Glsi07g1293 478 MobiDBLite consensus disorder prediction 235 255 - -
Glsi07g1293 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 355 IPR036638 GO:0046983
Glsi07g1293 478 Gene3D - 288 353 IPR036638 GO:0046983
Glsi07g1293 478 MobiDBLite consensus disorder prediction 200 255 - -
Glsi07g1293 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Glsi07g1293 478 MobiDBLite consensus disorder prediction 1 31 - -
Glsi07g1293 478 FunFam transcription factor UNE10 isoform X1 288 353 - -
Glsi07g1293 478 SMART finulus 299 348 IPR011598 GO:0046983
Glsi07g1293 478 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 475 IPR031066 -
Glsi07g1293 478 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Glsi07g1293 478 MobiDBLite consensus disorder prediction 267 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1293 Glsi-ChrGlsi07 21356683 21361398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1293 1 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 46.781 1.17e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g1293 HLH 3.8e-15 No_clan