Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1290 ATGGCTTTAATCACTTTTCAACTTGTATTCTCTCATTTCCTCACTCTCGCTTTCTTCGTATTCTTCCTAGTGAGTCCTTCCTCTTGCTCCAATCCCAGAAAGCTTCTTGATGCCTCGTACTCAGCGGATTCAGATTGGTCTCCAGCAGAGGCCACTTGGTATGGAAGCCCCAGCGGGGCCGGAAGTGATGGGGGAGCTTGTGGATATGGCAGTGCTGTTGAGCAACCTCCATTTTCCGCAATGGTATCAGCAGGAGGTCCACCTTTGTTTGACTCAGGCAAAGGCTGTGGTGCTTGTTATGAGGTGAAGTGCACAGAGAATTCGGCTTGCTCGGGCAACACGGTGAGGGTAGTTATCACTGATGAGTGTCCTGGGTGTGGTTCTGCCCAGAAAGTTCATTTTGATTTGAGTGGCACCGCTTTCGGTGCCATGGCAGTTTCAGGTCAGGCCGAGAAGCTACGTAATGTTGGGATATTGAACATTCAACATAGAAGAGTTGAATGTAACTATCCTGGCACGTCAATAGCATTTAAAGTGGACTCTGGATCCAACTCAAACTATTTTTCTGTCCTAATTGAGTATGAAAATGGAGATGGTGACCTTGCTAGCGCTCAACTCAAGGAAAGCCTCAACTCAGCGTCATGGCGTACTATGCAACAATCCTGGGGTGCAGTTTGGAAGCTTGACTCAGGCTCACCACTTCAAGCTCCCTTCTCTTTCCGGCTAACCTCAATGAATTCCGGCAAGACCGTTGTGGCGAACAATGTGATTCCAGCTGGGTGGAATCCCGGTCAAACTTATCGATCAGTTGTGAACTTTTAA 822 0.4805 MALITFQLVFSHFLTLAFFVFFLVSPSSCSNPRKLLDASYSADSDWSPAEATWYGSPSGAGSDGGACGYGSAVEQPPFSAMVSAGGPPLFDSGKGCGACYEVKCTENSACSGNTVRVVITDECPGCGSAQKVHFDLSGTAFGAMAVSGQAEKLRNVGILNIQHRRVECNYPGTSIAFKVDSGSNSNYFSVLIEYENGDGDLASAQLKESLNSASWRTMQQSWGAVWKLDSGSPLQAPFSFRLTSMNSGKTVVANNVIPAGWNPGQTYRSVVNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1290 273 Gene3D - 170 273 IPR036749 -
Glsi07g1290 273 PANTHER EXPANSIN-B3 20 273 - -
Glsi07g1290 273 SMART dpbb_1 82 163 IPR007112 -
Glsi07g1290 273 CDD DPBB_EXPB_N 46 168 - -
Glsi07g1290 273 Pfam Lytic transglycolase 83 161 IPR009009 -
Glsi07g1290 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Glsi07g1290 273 Gene3D - 32 169 IPR036908 -
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Glsi07g1290 273 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Glsi07g1290 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Glsi07g1290 273 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Glsi07g1290 273 SUPERFAMILY PHL pollen allergen 174 269 IPR036749 -
Glsi07g1290 273 SUPERFAMILY Barwin-like endoglucanases 40 172 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1290 Glsi-ChrGlsi07 21267763 21269680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1290 27 273 Expansin Gene Family AT1G65680 64.919 4.52e-119 340