Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1287 ATGGCTTTGATTGTGGATCAGCAATCTAACTTGAAGCACTTTTGTAAAATCTGTAAGAAAGGTTTTGGGTGTGGGAGAGCTCTGGGAGGGCACATGAGGGCACACGGCATAGGTGATGAAAGCTGGAACATCGACGAAGACGACCCAGCAAGTGATTGGGAAGACTGCGGAGGCAATGTGCCACCAAGCACCAAGCGCATGTATGCTCTAAGAACGAACCCTAACAGGCTGAAGAGCTGTAGGGTATGTGAGAATTGTGGTAAAGAGTTCTTGTCTTGGAAGTCCTTCCTCGAGCATGGGAAGTGCACCTCTGAAGATGCTGAGTCCCTGGTCTCATCTCCGGGCTCTGATGGCGGTGACGAGGATGGTGGCATGGGCCCGAGAAGTTGTGGTTGGTACAAAAGAAAGAGATCATTCAGAGTAAAAGTTGGTAACTTCAATTCTATTTGCCCATCAAGTGAAGAAGAAGACCTCGCCAACTGTTTGATGATGCTGTCCAATGGCACCGTTGATCATGATGCTCTCGTAGCCGAGCCAGAAGAGTCTTGTGCCTCAGCTAGCAAGGATGAGGAGCGAAGAAACCCCATAAACTTCAATATTACTCCATTAATGTCTTATAGAGCTCCTATAGATCATAACAACAAAGCCAAATCGGTGGTTCCCAAAGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTTTTCAATTCCCATCAAGCATTGGGAGGCCATCGAGCCAGCCACAAGAAGGTGAAAGGCTGCTTCGCTTCCCGGCTCGATCACCTCGACGACAGTCTCGGTGTCGGCGATGATGATGTCATCACCCATGAAGAACTTCTCCCTACAAAATATTCAAACTCGACCCTACGTTTTGATCCCCATCGCTCCAACAATGTCATGTTAATGGCGTCTTCGTCCAAAAGAAAATCAAAAGTTCATGAATGCTCAATATGTCACCGGACTTTCTCGTCGGGACAAGCGTTGGGAGGGCACAAGAGGTGCCATTGGATCACATCAAATGCACCAGACACCTCAACATTGGGTAGGTTTCAGCAGTTTCAAGACCATAAGGAGCATATGAATCAAGTACCCAAGTTTGATAAATCAGAGCCACTTGATCTCAAGCTCGATCTCAACCTGCCGGCTCCGGCCGATGAGCTATCCCGGCAGGATGTGTCTACAGAAATTTACTTGCAGCCATGGGTGGGAACAAAGGACAAAGACAATATTAATAATAATAATAGCAGTCAATGTCATAGCCACATCCCCCACCATTATCATCGCCACCGCCGCTATCGTCACGATACTGACAATGACAACAATGAGGACAAAAATAATAACAACAATAGTAATGCTTCGACGCAAAATGTGGAAGATGAAGCTGACAGTAAGGTGAAGTTAGCAAAACTAAGTGAGTTAAAGGACATGAATATTGGTGGGAGTTCTTCGCCATGGTTGCAGGTGGGAATTGGTTCAACAACTGACGTGGGAGCTGACCCATAA 1500 0.4667 MALIVDQQSNLKHFCKICKKGFGCGRALGGHMRAHGIGDESWNIDEDDPASDWEDCGGNVPPSTKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDGGDEDGGMGPRSCGWYKRKRSFRVKVGNFNSICPSSEEEDLANCLMMLSNGTVDHDALVAEPEESCASASKDEERRNPINFNITPLMSYRAPIDHNNKAKSVVPKGLFECKACKKVFNSHQALGGHRASHKKVKGCFASRLDHLDDSLGVGDDDVITHEELLPTKYSNSTLRFDPHRSNNVMLMASSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITSNAPDTSTLGRFQQFQDHKEHMNQVPKFDKSEPLDLKLDLNLPAPADELSRQDVSTEIYLQPWVGTKDKDNINNNNSSQCHSHIPHHYHRHRRYRHDTDNDNNEDKNNNNNSNASTQNVEDEADSKVKLAKLSELKDMNIGGSSSPWLQVGIGSTTDVGADP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1287 499 SMART c2h2final6 312 334 IPR013087 -
Glsi07g1287 499 SMART c2h2final6 225 247 IPR013087 -
Glsi07g1287 499 SMART c2h2final6 13 35 IPR013087 -
Glsi07g1287 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 334 IPR013087 -
Glsi07g1287 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Glsi07g1287 499 MobiDBLite consensus disorder prediction 475 489 - -
Glsi07g1287 499 SUPERFAMILY beta-beta-alpha zinc fingers 224 334 IPR036236 -
Glsi07g1287 499 SUPERFAMILY beta-beta-alpha zinc fingers 13 100 IPR036236 -
Glsi07g1287 499 MobiDBLite consensus disorder prediction 442 457 - -
Glsi07g1287 499 PANTHER OS02G0659100 PROTEIN 2 495 - -
Glsi07g1287 499 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Glsi07g1287 499 MobiDBLite consensus disorder prediction 403 499 - -
Glsi07g1287 499 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Glsi07g1287 499 MobiDBLite consensus disorder prediction 107 126 - -
Glsi07g1287 499 Gene3D Classic Zinc Finger 222 334 - -
Glsi07g1287 499 MobiDBLite consensus disorder prediction 404 419 - -
Glsi07g1287 499 Gene3D Classic Zinc Finger 11 102 - -
Glsi07g1287 499 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Glsi07g1287 499 Pfam C2H2-type zinc finger 13 35 - -
Glsi07g1287 499 Pfam C2H2-type zinc finger 225 249 - -
Glsi07g1287 499 Pfam C2H2-type zinc finger 311 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1287 Glsi-ChrGlsi07 21202943 21204442 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1287 133 379 C2H2 Transcription Factor Family AT1G02040 36.653 2.33e-30 119