LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi07g1284	ATGGCTTGCGATTGTGAAGGAAAAGAGAAGGGACGGATTCTATTGCATTGTAGAGTGAGAGATGATTCATACTCTGCTTCCTTGTATGCCTCCACTTTACTTTTCTCTCTTAAGGAATGCTTGTTGCCTACTTTATATGCACTCTCTCTCTCTCACACACACACACAAGAAACAAAAGAGAATGCCAAGAAGCTCACAAGTTCTGTAGAGACAGAGCAACAGGGTAAGCATCACTCTGTTTCTGCTCTGTTTTGGTGGTTTTTGGTTGTTGATCTTTGGTTCATGGAGAAGCACAAGTGCAAGCTTTGCTTTAGGAACTTCTCTAATGGTAGAGCTTTGGGGGGTCACATGAGGTCTCACATGATGAACCTTCCGGTTCCTCCAAAACCAGAGGAGCCACCATTAGCCCAACTCAGTTTCGAGGGTGAGTCAGCTCCATCTTCATCGTCCTCAGAAGAAGAAGTAGAAGGAGTTGATAAGGGTCTCGGCTATGAGCTTAGAGAGAACCCCAAGAGGAGCATTCGCCTTGTGAATCCTGAGTTTTCGTTTGCCGTTGATACTGGGTCTGTGATTCTTCAAGACAGAGAAAGCGAGACCGAGTCGTCGAAGAACCCAACTCGGAGAAGATCCAAAAGGGCATGGAAACTCGGTGTTCTTGAGGATCAATACGATCGTCACCACAAGCAAATTCAAGAACACGAGGCCTTCAAGAAGCTTAAATCAAGCGAACCCAGTAAGACCGAGTCTTGGGTCGAACCTGAACTGGTGAGTTCGATTTCCGATACCACCACTGAAGAACATGTTGCATTTTGTCTTATGATGCTGTCCAGGGACAAATGGAAGAAACACAAGGATCAAGAACAATTGCAAGAAGACCAGGACGAAGAAGAGGAAGACGACGAAGCTGAAAAATCTTCGGAAGATTCTGATGACTCCGAGGGATTCAAATCGTCCAAGAACCGAGTACGCGGAAGATACAAATGCGATACGTGCAAGAAAGTGTTTCGATCTTATCAAGCACTTGGTGGGCATAGAGCTAGTCACAAGAAGATCAAAGTGCCCACCACAGTATACCAACCCGAATTGGAGCAAGAAAATGCTGGCACTTCTGCTCCCATGGCGGAAAAGAAAATCCACGAATGCCCAGTTTGTTTCAGAGTTTTTGCTTCAGGTCAAGCACTTGGTGGACACAAGAGAACCCATGTTACTGGTTCAGCAACTCCACTTCGAACTTCTGCAAAGTTCGGAGACAATTTAATAGATCTTAATCTCCCAGCTCCAGTTGATGAAGATGATCTTAGCCAAATCGAAATCTCTGCAGTTTCAGATGCAGAATTCCTCAAACCCAATAGGTAA	1356	0.4513	MACDCEGKEKGRILLHCRVRDDSYSASLYASTLLFSLKECLLPTLYALSLSHTHTQETKENAKKLTSSVETEQQGKHHSVSALFWWFLVVDLWFMEKHKCKLCFRNFSNGRALGGHMRSHMMNLPVPPKPEEPPLAQLSFEGESAPSSSSSEEEVEGVDKGLGYELRENPKRSIRLVNPEFSFAVDTGSVILQDRESETESSKNPTRRRSKRAWKLGVLEDQYDRHHKQIQEHEAFKKLKSSEPSKTESWVEPELVSSISDTTTEEHVAFCLMMLSRDKWKKHKDQEQLQEDQDEEEEDDEAEKSSEDSDDSEGFKSSKNRVRGRYKCDTCKKVFRSYQALGGHRASHKKIKVPTTVYQPELEQENAGTSAPMAEKKIHECPVCFRVFASGQALGGHKRTHVTGSATPLRTSAKFGDNLIDLNLPAPVDEDDLSQIEISAVSDAEFLKPNR	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi07g1284	451	MobiDBLite	consensus disorder prediction	125	163	-	-
	Glsi07g1284	451	ProSitePatterns	Zinc finger C2H2 type domain signature.	328	348	IPR013087	-
	Glsi07g1284	451	ProSiteProfiles	Zinc finger C2H2 type domain profile.	379	406	IPR013087	-
	Glsi07g1284	451	PANTHER	ZINC FINGER PROTEIN ZAT1-RELATED	95	449	IPR044303	GO:0006355
	Glsi07g1284	451	ProSiteProfiles	Zinc finger C2H2 type domain profile.	98	125	IPR013087	-
	Glsi07g1284	451	MobiDBLite	consensus disorder prediction	234	253	-	-
	Glsi07g1284	451	SMART	c2h2final6	379	401	IPR013087	-
	Glsi07g1284	451	SMART	c2h2final6	98	120	IPR013087	-
	Glsi07g1284	451	SMART	c2h2final6	326	348	IPR013087	-
	Glsi07g1284	451	Gene3D	Classic Zinc Finger	323	401	-	-
	Glsi07g1284	451	MobiDBLite	consensus disorder prediction	282	319	-	-
	Glsi07g1284	451	Pfam	C2H2-type zinc finger	325	350	-	-
	Glsi07g1284	451	Pfam	C2H2-type zinc finger	98	121	-	-
	Glsi07g1284	451	Pfam	C2H2-type zinc finger	379	401	-	-
	Glsi07g1284	451	MobiDBLite	consensus disorder prediction	290	308	-	-
	Glsi07g1284	451	SUPERFAMILY	beta-beta-alpha zinc fingers	325	401	IPR036236	-
	Glsi07g1284	451	ProSitePatterns	Zinc finger C2H2 type domain signature.	381	401	IPR013087	-
	Glsi07g1284	451	ProSiteProfiles	Zinc finger C2H2 type domain profile.	326	353	IPR013087	-
	Glsi07g1284	451	ProSitePatterns	Zinc finger C2H2 type domain signature.	100	120	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi07g1284	Glsi-ChrGlsi07	21120697	21124270	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi07g1284	95	436	C2H2 Transcription Factor Family	AT3G60580	44.034	4.66e-69	219

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi07g1284		zf-C2H2_6	7.6e-13	CL0361