Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1279 ATGATGGAACCACGAAACCTTGCAGTGTTTACCTCGCAGGACTTTAAAGCAAGTACCAACGATTTCAGTCAGAATAGCCTCATCGGATTTACACAGTTTGGCAGATTGTTTAGGGGTAGTTTTGAAGGCCGTTGCGTATCAGTGAAGATTTGGGATGAAGAAATGTTGGAACGCTTAAGTTTCAAATATGATGATGAGTATTTGATCATTAATGAGGAAGTTAAATTTTGGACAAATCCAACAACAAAAGGTCATCCCAACTTGGTGAAAATAATTGGTTATTGTTGGGAGAAAGATGTAAAGGGTGTTGTTTATGACTTCAATCCTCTGGATACTTTGCACAATGCAATAGTGAAAGATTACCTCAACTGGCTTCAGAGAATTAACGTAATTCACGAACTAGCAAAGCTCCTGGAATTCATTCATGATCAGGAGATGCAAAATATGACCTTCAACATCAGTGCAGCTCACATATTGCTGGACAAGGATTACAGGCCAAAATTATTTGATCTACTACTGCTTAGCGAAGTGAAGTTGCTAAAGGAACAATTAACAAAGTCAGCTGGCTATGTTGATCCTTATTTCTCTCTTAAGGGTCGTGGGTGGGATAGAAGCTGGGAAGTGTTTTCATTTGGCGTAGTTGTGCTGGAACTAGTAACAAAAAGAACTTCGGACATGGGCATTAGGAAAGAAGGTGAGAGGCTAAATTTGGATGGTCTGCTTCATGCTTGGGCAAAGAAAGAGTACAAGCCAAACTGTTGTCTCGTCCACAAAAATTTACAGGAAGATTGGGATTTCTCTGCTGAAGATGGTGTTGCAATAACTATGCTGGCCATGAAGTGCATAGAATTTTTCCAATCGAACCGTCCCACAATGAGGGAAGTCTTGCAAGGTCTAGAGAATCTTCAAGTTTTACAACGTTTGAGTGATACTAGGCCAACAAAAAGGGAAAAGAACTTTATATAA 966 0.3965 MMEPRNLAVFTSQDFKASTNDFSQNSLIGFTQFGRLFRGSFEGRCVSVKIWDEEMLERLSFKYDDEYLIINEEVKFWTNPTTKGHPNLVKIIGYCWEKDVKGVVYDFNPLDTLHNAIVKDYLNWLQRINVIHELAKLLEFIHDQEMQNMTFNISAAHILLDKDYRPKLFDLLLLSEVKLLKEQLTKSAGYVDPYFSLKGRGWDRSWEVFSFGVVVLELVTKRTSDMGIRKEGERLNLDGLLHAWAKKEYKPNCCLVHKNLQEDWDFSAEDGVAITMLAMKCIEFFQSNRPTMREVLQGLENLQVLQRLSDTRPTKREKNFI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1279 321 PANTHER OS01G0588500 PROTEIN-RELATED 5 303 - -
Glsi07g1279 321 Gene3D Phosphorylase Kinase; domain 1 2 107 - -
Glsi07g1279 321 Gene3D Transferase(Phosphotransferase) domain 1 110 318 - -
Glsi07g1279 321 Pfam Protein kinase domain 25 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1279 321 SUPERFAMILY Protein kinase-like (PK-like) 5 300 IPR011009 -
Glsi07g1279 321 ProSiteProfiles Protein kinase domain profile. 22 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g1279 321 SMART serkin_6 22 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1279 Glsi-ChrGlsi07 20969554 20972907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1279 3 309 Strubbelig Receptor Gene Family AT4G22130 28.750 5.89e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi07g1279 Pkinase 1.3e-11 CL0016