Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1227 ATGCTAACTATGGCTACGTTTCGGTTGCTAATAACTCTTCTAATTGTCCCCTTTCTACTACCCTCTTCTGTTCATGGCTACTCATCAAATGAAGTGAAAGAATGGTGCAGCCAAACCCCTAACCCTCAGCCATGTGAATACTTCTTGAGCAGCAAAACTTTCGACAAACCCATCAAGCAAAAGTCTGATTTCCTCAAGGTCTCACTGGGACTAGTTCTAGAGAGAGCACAAAAGGGCAAAGCGAAGACTCTTTCTCTAGGTCCCAAGTGCAGGAACTCACGTGAAAAAGCTGCATGGGCTGATTGCCTTGAGCTCTACGAGAACACCATCCACAAGCTCAACAAAACCATAGACCCTCAAATCAAATGCACCCAAACCGATGCTCAAACATGGCTCAGCACGGCTCTAACCAACCTCGAGACATGCATACGTGGTTTCCATGACCTTGGAGTTCCAGACTACGTGTTGCCCTTGATGTCCAACAATGTTACCAAGTTGCTGAGCAACACCTTGTCTCTTAACAAGGGTCCATACAAAAAGCCAAGTTTTAAAGATGGGTTCCCCAAATGGGTCAAGCCCGGCGACCGGAAGCTGCTGCAGGTGGTGGCTACTCCGGCTTCTCAGGCTAATGTGGTGGTGGCCAAGGATGGGTCTGGAATGTACGAAACGGTGAAAGAGGCTGTGAATGCTGCACCAAGTACTAATAGTGAGAGGTATGTGATACACGTGAAGGCAGGAGTGTATGATGAACAAGTTGAGATAAAATCAACGAACATTATGTTGGTGGGAGATGGAATTGAAAAGACTATAATCACTGGTAGCAAAAGTGTTGGAGGAGGCACCGGAACCTTCCGTACATCCACTGTTGCTGCTGTTGGGGAAGGATTTATTGCTAGAGATATCACTTTTAGGAACACTGCTGGACCAGCAAACCAACAAGCTGTGGCATTTAGATCAGGGTCAGATTTATCAGTATTCTATAGATGCAGCTTTGAGGGTTACCAAGACACACTCTATGTCCATTCCGAGAGACAATTCTATAAAGAATGTGACGTCTATGGCACAGTTGACATTATCTTCGGTAATGCAGCTGTTGTTTTACAGAATTGCAATCTCTACGCTAGAAACCCTCCTCAGGGAACCATCACATTCACAGCTCAACTTCGAACCGATCCAAATCAAAACACTGCCATCATCATTCACAATTCTAAGGTTACAACCGCCCCGGATTTTAACCCTTGCAATGTCGAGTCGTTTCTGGGAAGGCCTTTGACGGAATATTCAAGAACGGTTTATATGAATACTTTTCTTGATAATTTGATTAACCCAGAAGGGTGGACGGAATGGCGTGGTGATTTTGCCTTGGAAACTTTGTATTATGCTGAGTATGCTAACACAGGCCCAGGTTCTTCCACTGCAAATAGGATCAAATGGAAGGGTTACCATGTTATTGGCGCATCTGAGGCCTCACAATTCACTGTGGAGAGCTTTCTTGCTGGGAATTCTTGGTTACCAGCCAGTGATGTGCCTTTCACCACTGATGTGCCATTCACCACTGATATGCCTTTCATTACTGATGTTATTGGTGCATCTAGTGGTAGCCATAGCTCATTTGTTATCATCGTTCTACTACTGTGGTTCTTATAA 1647 0.4493 MLTMATFRLLITLLIVPFLLPSSVHGYSSNEVKEWCSQTPNPQPCEYFLSSKTFDKPIKQKSDFLKVSLGLVLERAQKGKAKTLSLGPKCRNSREKAAWADCLELYENTIHKLNKTIDPQIKCTQTDAQTWLSTALTNLETCIRGFHDLGVPDYVLPLMSNNVTKLLSNTLSLNKGPYKKPSFKDGFPKWVKPGDRKLLQVVATPASQANVVVAKDGSGMYETVKEAVNAAPSTNSERYVIHVKAGVYDEQVEIKSTNIMLVGDGIEKTIITGSKSVGGGTGTFRTSTVAAVGEGFIARDITFRNTAGPANQQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYKECDVYGTVDIIFGNAAVVLQNCNLYARNPPQGTITFTAQLRTDPNQNTAIIIHNSKVTTAPDFNPCNVESFLGRPLTEYSRTVYMNTFLDNLINPEGWTEWRGDFALETLYYAEYANTGPGSSTANRIKWKGYHVIGASEASQFTVESFLAGNSWLPASDVPFTTDVPFTTDMPFITDVIGASSGSHSSFVIIVLLLWFL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1227 548 CDD PMEI-like_3 35 175 - -
Glsi07g1227 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 175 IPR035513 -
Glsi07g1227 548 Pfam Pectinesterase 210 501 IPR000070 GO:0030599|GO:0042545
Glsi07g1227 548 SUPERFAMILY Pectin lyase-like 204 513 IPR011050 -
Glsi07g1227 548 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Glsi07g1227 548 Pfam Plant invertase/pectin methylesterase inhibitor 31 173 IPR006501 GO:0004857
Glsi07g1227 548 Gene3D - 205 515 IPR012334 -
Glsi07g1227 548 PANTHER PECTINESTERASE 14 505 - -
Glsi07g1227 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 176 IPR035513 -
Glsi07g1227 548 SMART PMEI_2 27 173 IPR006501 GO:0004857
Glsi07g1227 548 FunFam Pectinesterase 204 515 - -
Glsi07g1227 548 FunFam Pectinesterase 27 176 - -
Glsi07g1227 548 NCBIfam pectinesterase inhibitor domain 10 175 IPR006501 GO:0004857
Glsi07g1227 548 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1227 Glsi-ChrGlsi07 18765465 18768592 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1227 4 513 Carbohydrate Esterase AT2G45220 63.883 0.0 679