Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1224 ATGCTAACTATGGCGACGTTTCGCTTGCTAATAACCCTTCTAATTGTCGTCCCCTTTCTACTATCCTCTTCTGTTCATGGCTACTCATCAAAGGAAGCGAAAGAGTGGTGCAGCCAAACCCCCAACCCTCAGCCTTGCGAATACTTCTTGGGCGGCGAAACTTTCAACAAACCCATCAAGCAAAAGTCTGATTTCCTCAGGGTCTCACTAGAACTAGCTCTAGAGAGAGCACAAAGGGGCGAAGCAAAGACTCTTTCTCTAGGCCCTAAGTGCCGGAACCCGCGTGAAAAAGCAGCATGGGCCGATTGCCTTGAGCTTTACGAGAACACCATCCACAAGCTCAACAAAACCGTAGACCCTAAAATCAAATGCACCCAAACCGATGCTCAAACATGGCTCAGCACAGCTCTAACCAACCTCCAGACATGCATACTTGGCTTCTATGACCTCGGGGTTCCAGACTATGTGTTGCCCTTGATGTCCAACAATGTTACCAAGTTGCTGAGCAACACCTTGTCCCTTAACAAGGGTCCATACAAAATGCCAAGTTTTAAAAATAGTTTGCCCAAATGGGTCAAGCACGGCGACCGGAAGCTGTTGCAGGCAGCGGCTACTCCGGCTTCTCAGGCTAATGTGGTGGTGGCCAAGGATGGGTCTGGAAAGTACAAAACGGTGAATGAGGCCGTGAATGCTGCACCAAAGAGTAATAGTAAGAGGTATGTGATATACGTGAAGGCAGGAGTGTATGATGAACAAGTTGAGATAAAATCAAACAACATTATGTTGGTGGGAGATGGAATTGGAAAGACTATAATCACTGGTAGCAAAAGTGTTGGAGGAGGTGCCACTACCTTCCGTTCTGCCACAGTAGCTGCTGTTGGGGATGGATTCATTGCTAGAGATATCACTTTTAGGAACACTGCTGGACCAACAAACCACCAAGCTGTGGCATTTAGATCAGGGTCAGATTTATCAGTATTCTATAGATGCAGCTTTGAGGGTTACCAAGATACACTCTATGTCCATTCCGAGAGACAATTCTATAAAGAATGTGACGTCTATGGCACAGTTGACTTTATCTTCGGTAATGCAGCAGTTGTTTTACAAAATTGCAATATCTACGCTAGAAACCCTCCTCAGGGAACCATCACATTCACGGCTCAAGGCCGAACTGATCCCAATCAAAACACTGGCATCATCATTCACAATTCTAAGGTTACAACTGCTTCGGATTTTAACCCTACCAATGTCAAGTCGTTTCTGGGAAGACCTTGGAAAGAATATTCGAGAACGGTTTATATGAAGACTTTTCTTGATAGTTTGATTAACCCAGAAGGGTGGATGGAGTGGAGTGGTAATTTTGCCTTGGACACCTTGTATTATGCTGAGTATGCTAACACAGGCCCTGGTTCTTCCACTGTAAATAGGGTCAAATGGAAGGGCTACCATGTTATTGGTGCATCTGAGGCCTCACAATTCACTGTGGATAGCTTTCTTGCTGGGAATTCTTGGTTACCAGCCACTGATGTGCCTTTCACCCCTGGTCTTTGA 1551 0.4565 MLTMATFRLLITLLIVVPFLLSSSVHGYSSKEAKEWCSQTPNPQPCEYFLGGETFNKPIKQKSDFLRVSLELALERAQRGEAKTLSLGPKCRNPREKAAWADCLELYENTIHKLNKTVDPKIKCTQTDAQTWLSTALTNLQTCILGFYDLGVPDYVLPLMSNNVTKLLSNTLSLNKGPYKMPSFKNSLPKWVKHGDRKLLQAAATPASQANVVVAKDGSGKYKTVNEAVNAAPKSNSKRYVIYVKAGVYDEQVEIKSNNIMLVGDGIGKTIITGSKSVGGGATTFRSATVAAVGDGFIARDITFRNTAGPTNHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYKECDVYGTVDFIFGNAAVVLQNCNIYARNPPQGTITFTAQGRTDPNQNTGIIIHNSKVTTASDFNPTNVKSFLGRPWKEYSRTVYMKTFLDSLINPEGWMEWSGNFALDTLYYAEYANTGPGSSTVNRVKWKGYHVIGASEASQFTVDSFLAGNSWLPATDVPFTPGL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1224 516 FunFam Pectinesterase 205 516 - -
Glsi07g1224 516 PANTHER PECTINESTERASE 15 508 - -
Glsi07g1224 516 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 176 IPR035513 -
Glsi07g1224 516 Pfam Pectinesterase 211 502 IPR000070 GO:0030599|GO:0042545
Glsi07g1224 516 SUPERFAMILY Pectin lyase-like 205 515 IPR011050 -
Glsi07g1224 516 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Glsi07g1224 516 SMART PMEI_2 28 174 IPR006501 GO:0004857
Glsi07g1224 516 Gene3D - 206 516 IPR012334 -
Glsi07g1224 516 CDD PMEI-like_3 36 176 - -
Glsi07g1224 516 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Glsi07g1224 516 NCBIfam pectinesterase inhibitor domain 7 176 IPR006501 GO:0004857
Glsi07g1224 516 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 177 IPR035513 -
Glsi07g1224 516 Pfam Plant invertase/pectin methylesterase inhibitor 34 174 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1224 Glsi-ChrGlsi07 18737175 18740759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1224 4 516 Carbohydrate Esterase AT2G45220 65.764 0.0 706