Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g1218 ATGGCAACGTCGAACTTATTCTTAACTCTTCTTATTCTTCCTTTCTTATTTTCCTCTTTGGTTTCCTGTTATTCTTCAAATGATATTAAACTATGGTGTAGGCAAACCCCAAACCCCAAACCCTGTGAGTATTTCTTGAGTGATAACCCTAATCACAAACATAAACCCATCAAACACAAAGATGATTTCCTCAAACTTTCTATAGAACTTGTCCAAGAGCGAGCAATTATAGGGCATGCAAACACTCTTGCGCTTGGTCCGAAGTGTCGGAATCCACAGGAAAAAGCTGCATGGGCTGATTGCCTGGAGTTGTACGAGCACACCATCCATAGACTCAACAAAACCCTAGACCCCAACACCAAGTGCACCCAAACCGATACCCAAACATGGCTCAGCTCAGCTCTCACAAATCTTGAGGCATGCAAAGCTGGGTTTTATGAACTCGGGGTTCAAGACTATGTGCTGCCCTTGATGTCCAACAATGTCACTAAGTTGCTAAGCAATACTTTGGCTCTAAACAAGGTTCAATATCAAGAACCAACTTATAAAGATGGGTTCCCAACATGGGTCAGACCCGGGGATAGGAAGCTATTGCAGAGTTCTTCTCCATCTTCTCGGGCTAATGTTGTGGTGGCTAAAGATGGGTCTGGCCACTATACAACAGTGAGTGCTGCCATAAATGCTGCACCAAAAAGCAGTGGAAGGTATGTTATATACGTAAAGGAAGGAATATACAATGAACAAGTGGAGATAAAGCTGAACAACATCATGTTGGTGGGAGATGGTATTGGAAAGACTATTATTACGGGTAGCAATAGCGTTGGAGGGGGCACCACTACCTTCCGTTCTGCAACTGTTGCTGTTGTTGGGGATGGGTTTATTGCTCAAGACATCACATTCAGGAACACTGCTGGTGCATCTAACCACCAAGCTGTAGCATTGCGTTCTGGGTCAGACTTATCAGTATTCTACAGATGTGGTTTTGAAGGTTTCCAGGACACATTGTATGTGTTCTCTGAGAGACAATTCTATAGGGAATGTGATGTTTATGGCACAGTTGACTTCATCTTTGGTAATGCTGCCGTAGTTTTCCAGAATTGCAACCTTTTTGCCAGAAATCCTCCTAACAAAGTCAACACAATCACTGCCCAAGGTCGAACTGATCCAAATCAAAACACTGGAATTTCCATTCACAATTGTATGGTTACAGCTGCCTCAGATTTAAAACCAGTTCAAAACTCTGTGAAGACCTATCTTGGAAGGCCATGGCAGCAATATTCTCGAACAGTTTTCATGAAGACTTCTCTTGATAGTTTGATCGATCCTGCTGGTTGGTTGGAATGGAGTGGTAACTTTGCCTTAAGTACTTTGTACTACGGAGAGTACATGAACACTGGTTTAGGTTCATCCACTGCTAATCGGGTTAAATGGGCTGGTTATCATGTTATTACTAGTGCATCCGAGGCCTCAAAATTCACTGTTGCAAACTTCATCGCTGGGAGTTCATGGTTGCCTGCCACCAATGTTCCTTTCACCCCTAGTTTATAA 1548 0.4302 MATSNLFLTLLILPFLFSSLVSCYSSNDIKLWCRQTPNPKPCEYFLSDNPNHKHKPIKHKDDFLKLSIELVQERAIIGHANTLALGPKCRNPQEKAAWADCLELYEHTIHRLNKTLDPNTKCTQTDTQTWLSSALTNLEACKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPTYKDGFPTWVRPGDRKLLQSSSPSSRANVVVAKDGSGHYTTVSAAINAAPKSSGRYVIYVKEGIYNEQVEIKLNNIMLVGDGIGKTIITGSNSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCGFEGFQDTLYVFSERQFYRECDVYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNCMVTAASDLKPVQNSVKTYLGRPWQQYSRTVFMKTSLDSLIDPAGWLEWSGNFALSTLYYGEYMNTGLGSSTANRVKWAGYHVITSASEASKFTVANFIAGSSWLPATNVPFTPSL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g1218 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Glsi07g1218 515 Gene3D - 203 515 IPR012334 -
Glsi07g1218 515 PANTHER PECTINESTERASE 16 507 - -
Glsi07g1218 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 175 IPR035513 -
Glsi07g1218 515 Pfam Pectinesterase 208 500 IPR000070 GO:0030599|GO:0042545
Glsi07g1218 515 CDD PMEI-like_3 31 174 - -
Glsi07g1218 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Glsi07g1218 515 SMART PMEI_2 24 172 IPR006501 GO:0004857
Glsi07g1218 515 SUPERFAMILY Pectin lyase-like 203 513 IPR011050 -
Glsi07g1218 515 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Glsi07g1218 515 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Glsi07g1218 515 NCBIfam pectinesterase inhibitor domain 3 174 IPR006501 GO:0004857
Glsi07g1218 515 FunFam Pectinesterase 24 175 - -
Glsi07g1218 515 FunFam Pectinesterase 202 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g1218 Glsi-ChrGlsi07 18608418 18610225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g1218 1 515 Carbohydrate Esterase AT2G45220 67.636 0.0 730